PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75957.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 27109.2 Da PI: 5.8473

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75957.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.8e-18	31	84	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k OWM75957.1 31 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 84 456899***********************************************9 PP
2	HD-ZIP_I/II	129.8	1.1e-41	30	122	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k++ne+L++++++L++e+++ OWM75957.1 30 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKADNEALQAQNQKLQAEIQA 122 69***************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MSFSGVEVSA EEVPNAGEDE LSDDGSQAGE KKRRLNMEQV KTLEKNFELG NKLEPERKMQ 60 LARALGLQPR QIAIWFQNRR ARWKTKQLEK DYDLLKRQFE AVKADNEALQ AQNQKLQAEI 120 QALKSREPAE SINLNKETEG SSSNRSENSS EFKLDVSTRT PRTIDSPPLA APPPPPHPIT 180 SRQLFPTSSS LRSVNGGGGG IAHQLLHSSS SSSRPDLMVK EETFTNMFCG IDDQSGYWPW 240 LE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	87	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	3e-83	HD-ZIP family protein