PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75700.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 314aa MW: 35324.1 Da PI: 7.0885

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00083	6	27	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+++Fs+ + H+r+H OWM75700.1 6 VCKICSRCFSSGKAMGGHMRSH 27 6*******************99 PP
2	zf-C2H2	11.7	0.00081	184	206	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k+F++ L H +H OWM75700.1 184 YRCDTCNKCFRSYQALGGHRASH 206 9***********99999998887 PP
3	zf-C2H2	11.2	0.0012	221	243	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H ++H OWM75700.1 221 FECPYCYRVFDSGQALGGHKKVH 243 89*********999999999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MEKNRVCKIC SRCFSSGKAM GGHMRSHFAK LPLPGPNPND KLNSFAASST TQPLKSHHHH 60 HDTTIPLLHS QGNDHARDSS GRSANGSRRP SPSTHRGRRR SLCSTTSAVE PVKLDTPELS 120 AEDVALCLMM LSCDRWKAKN AKAAEEDDGD EQEEEEETYE DCSSEYEHDE SFCATEARGT 180 EGEYRCDTCN KCFRSYQALG GHRASHTNNN YAAIGTNRRI FECPYCYRVF DSGQALGGHK 240 KVHNLHTAYA AANSNLVSSV ATNKSRINLN LPVQHEKLED EELLREFEFE FSSALKDDKE 300 EMLRPIKRRT FRLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	309	RPIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	5e-30	C2H2 family protein