PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM74936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18964.1 Da PI: 7.8501 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.7 | 2e-43 | 15 | 113 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++C++apyfp e+p+kfa vhk+FGasnv+kll+++ +++red+++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ OWM74936.1 15 PCAACKFLRRKCQPECIFAPYFPPEEPQKFASVHKIFGASNVSKLLHEVLPHQREDTVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKELDATNA 113 7*********************************************************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MASSSSSSSS YSTSPCAACK FLRRKCQPEC IFAPYFPPEE PQKFASVHKI FGASNVSKLL 60 HEVLPHQRED TVNSLAYEAE ARLKDPVYGC VGAISVLQRQ VIRLQKELDA TNADLIRHTT 120 RRRINGNNSG HRSGGEGYDQ GPGIIYYPNY HQWNCNGGFG DGHQGDGEGN NM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 6e-65 | LBD family protein |