PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74793.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 439aa MW: 48755.3 Da PI: 9.4491

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F + +L +H r+H OWM74793.1 104 FSCRECGQVFGSLKSLSNHRRVH 126 89*******************99 PP
2	zf-C2H2	11.9	0.00069	379	401	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y Cp C k+F ++ L H r+H OWM74793.1 379 YACPTCYKVFGSSQALGGHKRVH 401 89******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MEQRYCCRQC NLSFASGRVL GGHMKGHVAR KKEQKRALRE TTGKKPEASD PCGGGYGLRE 60 NPKKSWKASP LRMRGGGRVS TGAPLGDVSV RPGLGNEGKE RGPFSCRECG QVFGSLKSLS 120 NHRRVHVQPE KFNHGRSDLE ETLANVAPVC PVRRKRSRRV FYSPPLSEDS NCDEQPPIPS 180 PVSETEQDVY ELAFSLMLLS RGLRDPDDKF TEKILPIIES GLSNKVHQTA KDDAFGVKKV 240 SDSNYKEVHS GEPNEEGKLV ELKLQVDMVY LETECKNSEG LFAFGDGETV MRARAEAAKL 300 GCESKELEEC YGRSRKKPKL EPNWKESKNK IKIKKGSSDH RIPSPTGERQ EKVLADLFPT 360 KENKPETERE SVDTDDKTYA CPTCYKVFGS SQALGGHKRV HSMKGTTGTK AGKITKVLNQ 420 FRLSGISNMF NLNAQAMCT

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MEQRYCCRQC NLSFASGRVL GGHMKGHVAR KKEQKRALRE TTGKKPEASD PCGGGYGLRE  60
NPKKSWKASP LRMRGGGRVS TGAPLGDVSV RPGLGNEGKE RGPFSCRECG QVFGSLKSLS  120
NHRRVHVQPE KFNHGRSDLE ETLANVAPVC PVRRKRSRRV FYSPPLSEDS NCDEQPPIPS  180
PVSETEQDVY ELAFSLMLLS RGLRDPDDKF TEKILPIIES GLSNKVHQTA KDDAFGVKKV  240
SDSNYKEVHS GEPNEEGKLV ELKLQVDMVY LETECKNSEG LFAFGDGETV MRARAEAAKL  300
GCESKELEEC YGRSRKKPKL EPNWKESKNK IKIKKGSSDH RIPSPTGERQ EKVLADLFPT  360
KENKPETERE SVDTDDKTYA CPTCYKVFGS SQALGGHKRV HSMKGTTGTK AGKITKVLNQ  420
FRLSGISNMF NLNAQAMCT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	4e-13	C2H2 family protein