PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74790.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 456aa MW: 51297.9 Da PI: 8.86

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F + +L +H r+H OWM74790.1 104 FPCRECGQVFGSLKSLSNHRRVH 126 89*******************99 PP
2	zf-C2H2	13.3	0.00025	381	403	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C k+F ++ L H r+H OWM74790.1 381 YTCPTCYKVFGSSQALGGHKRVH 403 9*******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MEQRYHCRQC NLSFASGRVL GGHMKGHVAR KKKQERTLRE TAGKKPEAFD PCGRGYGLRE 60 NPKKSWKASR LRMRGGGHGS NGGPLGDVSV RPGLGNEGKE RGPFPCRECG QVFGSLKSLS 120 NHRRVHVQPE KFNHGRSDLE ETLANVAPVC PVRRKRSRRV FYSPPLSEDS NCDEQPPIPS 180 PVSETEQDVY ELAFSLMLLS RGLRDPDDEF TEKILPIIES GLSNKVDQTA KDDAFRVKKV 240 SDSNYKELHS GEPNEERKLV ELKLQVDMVY LETEGKNSES PFVVGDSETV MRAHADASKL 300 GCESDELEEC HDRSRKNPKL EHNWKESKNK NKIKIKKGSP DHRIPSPTGE RQEKVLVDPF 360 PRKENQPEME RDSVDMDDKT YTCPTCYKVF GSSQALGGHK RVHSMKGTTG TKAGKITKVL 420 NQFRLSDISN MFDLSAKAMC YFSPCSCSCP SQFFSF

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MEQRYHCRQC NLSFASGRVL GGHMKGHVAR KKKQERTLRE TAGKKPEAFD PCGRGYGLRE  60
NPKKSWKASR LRMRGGGHGS NGGPLGDVSV RPGLGNEGKE RGPFPCRECG QVFGSLKSLS  120
NHRRVHVQPE KFNHGRSDLE ETLANVAPVC PVRRKRSRRV FYSPPLSEDS NCDEQPPIPS  180
PVSETEQDVY ELAFSLMLLS RGLRDPDDEF TEKILPIIES GLSNKVDQTA KDDAFRVKKV  240
SDSNYKELHS GEPNEERKLV ELKLQVDMVY LETEGKNSES PFVVGDSETV MRAHADASKL  300
GCESDELEEC HDRSRKNPKL EHNWKESKNK NKIKIKKGSP DHRIPSPTGE RQEKVLVDPF  360
PRKENQPEME RDSVDMDDKT YTCPTCYKVF GSSQALGGHK RVHSMKGTTG TKAGKITKVL  420
NQFRLSDISN MFDLSAKAMC YFSPCSCSCP SQFFSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	67	RKKKQERTLRETAGKKPEAFDPCGRGYGLRENPKKSWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	5e-12	C2H2 family protein