PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74768.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 398aa MW: 43198.9 Da PI: 6.7007

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl OWM74768.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.8	9e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l OWM74768.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKN DALLSSDGQS KSAAKLSHMA QWESARLEAE ARLVRESKLR SHSFHQGGNS 180 SPSGFTTPAS AFAVSGQLLT KTPGVGGDHL ESPTSTLTFS ESAPPIMAGC NMRENSKQQM 240 IEFVGTSDPE GRNNMIKEEG EQDWTKNSMP NLGEFKEGIG NTLSFTSTNF HDISMSMSLE 300 APWTGHDSPI RASTSGHGGS LENEIEAEGF TNLLFNSSCE QSISEGGGGS GGDSENGGES 360 GCSGSGSGSG SDYYEDNKNY WNSILNLVNS SPSGSPLF

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLSSDGQS KSAAKLSHMA QWESARLEAE ARLVRESKLR SHSFHQGGNS  180
SPSGFTTPAS AFAVSGQLLT KTPGVGGDHL ESPTSTLTFS ESAPPIMAGC NMRENSKQQM  240
IEFVGTSDPE GRNNMIKEEG EQDWTKNSMP NLGEFKEGIG NTLSFTSTNF HDISMSMSLE  300
APWTGHDSPI RASTSGHGGS LENEIEAEGF TNLLFNSSCE QSISEGGGGS GGDSENGGES  360
GCSGSGSGSG SDYYEDNKNY WNSILNLVNS SPSGSPLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-119	MYB family protein