PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM73740.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 434aa MW: 48511.4 Da PI: 7.4486

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM73740.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.8	2.4e-07	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H OWM73740.1 245 HYCSICGKGFKRDANLRMHMRAH 267 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MASRTTSSFQ NFPQMPDPSY EMAGDEEGHP HHTVVFPAAI DSIRTCPSSE STTSPSTLLV 60 YNLSVLRNKV HQVQSLVTLL ISPDQAQAEP ASTVVSSMGT LIQEIIFTAS SMMFTCQQMV 120 TTDNNTNSGT VSPHFSDELL SHNQLSNNHA LDHALGGDEQ VGRNLYPETG LNWYNDNQSN 180 VMSMTTSINN DHINSSSTHL NNTSMEPKRE AQKLPQAPDG RDQTYSSDCD IIELDATELL 240 AKYTHYCSIC GKGFKRDANL RMHMRAHGDE YKSSSALSNP LKKRTGIDPN GNIINNDNEE 300 HINDNPVNKL PRKYSCPHEG CRWNQRHTRF QPLKSMICVK NHYKRSHCPK LFACKQCNAK 360 QFSVLSDLRT HEKHCGDIKW QCSCGTTFSR KDKLMGHVAL FRGHSPMVNL RKPAGNAEQL 420 SMLSMQIGDR QGNL

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MASRTTSSFQ NFPQMPDPSY EMAGDEEGHP HHTVVFPAAI DSIRTCPSSE STTSPSTLLV  60
YNLSVLRNKV HQVQSLVTLL ISPDQAQAEP ASTVVSSMGT LIQEIIFTAS SMMFTCQQMV  120
TTDNNTNSGT VSPHFSDELL SHNQLSNNHA LDHALGGDEQ VGRNLYPETG LNWYNDNQSN  180
VMSMTTSINN DHINSSSTHL NNTSMEPKRE AQKLPQAPDG RDQTYSSDCD IIELDATELL  240
AKYTHYCSIC GKGFKRDANL RMHMRAHGDE YKSSSALSNP LKKRTGIDPN GNIINNDNEE  300
HINDNPVNKL PRKYSCPHEG CRWNQRHTRF QPLKSMICVK NHYKRSHCPK LFACKQCNAK  360
QFSVLSDLRT HEKHCGDIKW QCSCGTTFSR KDKLMGHVAL FRGHSPMVNL RKPAGNAEQL  420
SMLSMQIGDR QGNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-102	C2H2 family protein