PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM73252.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 966aa MW: 107095 Da PI: 6.8247

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM73252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.6	1.2e-23	128	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l OWM73252.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI--WNEKNQL 222 99***************************96555555..8********************************************..8899999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ OWM73252.1 223 LLGIRRA 229 **997 PP
2	Auxin_resp	121.6	6e-40	254	337	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp+rWpnS+Wrs+k OWM73252.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPIRWPNSHWRSVK 337 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 966 aa Download sequence
MRLSPAGFSH QPQEGEKKCL NSELWHACAG PLVSLPQVGS RVVYFPQGHS EQVAASTNKE 60 VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHDNEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPIRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSPF PLRLKRPWPS GLPSFHALKD GDMSINSPLM WLQGSVGDQG IQSFNFQGFG 420 MNPWVQPRLD ASHLTGLQPD VYQAMAAAAL QEMRAVDSSK SVSPSLLPPL TQTQSTSFQR 480 QLLQQSQPQS TFVQGFPESQ ASAQAQAQAQ LLQQQLQRQH SFIEQRQHLQ QSQQQQQLQQ 540 SPQQQQLQQS PQQQLQQSQQ QQQRLQQSQQ QQQHRLQQSQ QQQQQQQQQQ LLQQPQHQQL 600 QQSQQLSQVS IQQQIPSIVS SLPQYASSSG SQAQRPQTFS DRVGSTNNTL GASDVSPMQS 660 ILGSLSHDGG SHLLNVNGPN PTCPTSAMSS PSLIPKQSSV EVEPLVVPSV PLVNSSVSEL 720 ASLLPPFPGR EYSAPTAYQG SAADPQSSLL FGVNIDSSSY MLQNGMQHLR SIGSENDSLP 780 VPFASSDFAA TATGTDFPLN SEMTTSSCVD EPGFLPSTGH VDQVNPSTGN FVKVQKLGSL 840 GRSLDISKFS SYKELGSELA RMFGLEGQLE DPQRSGWQLV FVDRENDILL LGDGPWQEFV 900 NNVWYIKILS PLEVPQLGKE GLSPAASLPS NHRLSNGNRT ASEEYVSRQE LRNMNNGIAS 960 RGSLDY

Sequence ? help Back to Top

Protein Sequence Length: 966 aa Download sequence

MRLSPAGFSH QPQEGEKKCL NSELWHACAG PLVSLPQVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPIRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS GLPSFHALKD GDMSINSPLM WLQGSVGDQG IQSFNFQGFG  420
MNPWVQPRLD ASHLTGLQPD VYQAMAAAAL QEMRAVDSSK SVSPSLLPPL TQTQSTSFQR  480
QLLQQSQPQS TFVQGFPESQ ASAQAQAQAQ LLQQQLQRQH SFIEQRQHLQ QSQQQQQLQQ  540
SPQQQQLQQS PQQQLQQSQQ QQQRLQQSQQ QQQHRLQQSQ QQQQQQQQQQ LLQQPQHQQL  600
QQSQQLSQVS IQQQIPSIVS SLPQYASSSG SQAQRPQTFS DRVGSTNNTL GASDVSPMQS  660
ILGSLSHDGG SHLLNVNGPN PTCPTSAMSS PSLIPKQSSV EVEPLVVPSV PLVNSSVSEL  720
ASLLPPFPGR EYSAPTAYQG SAADPQSSLL FGVNIDSSSY MLQNGMQHLR SIGSENDSLP  780
VPFASSDFAA TATGTDFPLN SEMTTSSCVD EPGFLPSTGH VDQVNPSTGN FVKVQKLGSL  840
GRSLDISKFS SYKELGSELA RMFGLEGQLE DPQRSGWQLV FVDRENDILL LGDGPWQEFV  900
NNVWYIKILS PLEVPQLGKE GLSPAASLPS NHRLSNGNRT ASEEYVSRQE LRNMNNGIAS  960
RGSLDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	0.0	ARF family protein