PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM72613.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

AP2

Protein Properties

Length: 533aa MW: 59353 Da PI: 4.9085

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM72613.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.5	1.1e-10	61	118	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++g+++A+++d ++ ++ + k+ + g ++t+e Aa+ ++ a++kl+g OWM72613.1 61 SVFRGVTRHRWTGKFEAHLWDKKSsRKnIEaKKGRQGAYDTEEAAARIYDLAALKLWG 118 689****************555466655777777*****************987 PP
2	AP2	54.3	3.3e-17	161	212	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+Ir ++ k+ +lg++ t eeAa+a++ a+++l+g OWM72613.1 161 SKYRGVARHHYNGRWEARIRKD---NVDKYLYLGTYETQEEAAEAYDLAALQLKG 212 89**************9993...345**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MKGPKVSLSS SSSDSPYFGS DSIGHSDQSD KPKKKISRAD EKSDKIHQNA DSSGINGKRS 60 SVFRGVTRHR WTGKFEAHLW DKKSSRKNIE AKKGRQGAYD TEEAAARIYD LAALKLWGLD 120 TPLNFPRDEY RKEIEEMQNT TKEEYIATLR RRSKGFSRGS SKYRGVARHH YNGRWEARIR 180 KDNVDKYLYL GTYETQEEAA EAYDLAALQL KGPNAVTNFD KSLYTGRLKN NELLGFHQPQ 240 LGEVDAGQPS PPQPQSGIHG QEAAAANPRY VQPLLLPPPF EQMAVAEDIL IQLSPPLASS 300 FPQEVAIAGS LLQLIGGEPP LLSTPPECQL FQACNMDHVL SCHSEMSLEA MPQIPPLQSY 360 CLGQVLTSTG FQPIDETTLM LQTQLQQNHP HQGPGTSCEQ IDQSPSPALG FNIADKSWLD 420 SFLLPNQNFC TEYVVLANFP CLDPQSIGIS SPAGYDDDYY PLSDLFKDSR LEENSIDWIF 480 ESNENQNRTS FPTRNDGDSG YDEKMAVLPK DDASSPSGCA FCDDVLNFHE TEE

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MKGPKVSLSS SSSDSPYFGS DSIGHSDQSD KPKKKISRAD EKSDKIHQNA DSSGINGKRS  60
SVFRGVTRHR WTGKFEAHLW DKKSSRKNIE AKKGRQGAYD TEEAAARIYD LAALKLWGLD  120
TPLNFPRDEY RKEIEEMQNT TKEEYIATLR RRSKGFSRGS SKYRGVARHH YNGRWEARIR  180
KDNVDKYLYL GTYETQEEAA EAYDLAALQL KGPNAVTNFD KSLYTGRLKN NELLGFHQPQ  240
LGEVDAGQPS PPQPQSGIHG QEAAAANPRY VQPLLLPPPF EQMAVAEDIL IQLSPPLASS  300
FPQEVAIAGS LLQLIGGEPP LLSTPPECQL FQACNMDHVL SCHSEMSLEA MPQIPPLQSY  360
CLGQVLTSTG FQPIDETTLM LQTQLQQNHP HQGPGTSCEQ IDQSPSPALG FNIADKSWLD  420
SFLLPNQNFC TEYVVLANFP CLDPQSIGIS SPAGYDDDYY PLSDLFKDSR LEENSIDWIF  480
ESNENQNRTS FPTRNDGDSG YDEKMAVLPK DDASSPSGCA FCDDVLNFHE TEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.1	3e-60	AP2 family protein