PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM72460.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 264aa MW: 28606.3 Da PI: 9.6875

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM72460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C ++Fs++ L H++ H OWM72460.1 80 FSCNYCQRVFSSSQALGGHQNAH 102 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MDQQVDQTLV VPHEQSASPS SNGSMGREAN PGQSLQLVLY NKAGPLAANR PHEPPRDERV 60 PAPAPPPPEE RSQCGKPKVF SCNYCQRVFS SSQALGGHQN AHKQERALDK QRRGLELGSL 120 GPPFSYLSSA LGVQVPAMYG SFGRSPLGVR YDSMIHKPKP YMFPVNLAAY PLGGFRHGCS 180 NPPPHPFNRP RMDAPVQAHM RGGPGLGLGL GLGRVPQVPS EYNSYQATNN RQTMVQSNDT 240 VKQKKAEVPE TDPSGIDLTL KLGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-17	C2H2 family protein