PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM72372.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 362aa MW: 40032 Da PI: 8.4031

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM72372.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++++++ G g+W+++++ g+ R++k+c++rw +yl OWM72372.1 14 KGLWSPEEDEKLLNYITKNGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	48.3	2.4e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l+++++ lG++ W+ Ia+ ++ gRt++++k++w++ OWM72372.1 67 RGAFSQQEENLIIELHSVLGNR-WSQIAAQLP-GRTDNEIKNFWNS 110 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KNGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQQEENLIIE LHSVLGNRWS QIAAQLPGRT DNEIKNFWNS CIKKKLKQSG 120 IDPTTHKPLS EVLTENKNEN KPPSAMVKSN EKKLLLPPQV ASSGPVNDII AAPESSNNVS 180 CKPSDVLRHF SFQQLNYGPD MGSFSVANQN SCGQLGFDFN VLPNSTSTEL VTAPASSFSA 240 TTMPPTPAQV RPSISLPSEN SCVTSSCNSA FSYYDNAPFS WDFGNFDKLP QAQVHSLVED 300 AKWSEYLQIP FVTGSSSPEQ SQAYSGIKPD TVNFQTLGFP QSASNTHSKD FQRLALAFGQ 360 TL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KNGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQQEENLIIE LHSVLGNRWS QIAAQLPGRT DNEIKNFWNS CIKKKLKQSG  120
IDPTTHKPLS EVLTENKNEN KPPSAMVKSN EKKLLLPPQV ASSGPVNDII AAPESSNNVS  180
CKPSDVLRHF SFQQLNYGPD MGSFSVANQN SCGQLGFDFN VLPNSTSTEL VTAPASSFSA  240
TTMPPTPAQV RPSISLPSEN SCVTSSCNSA FSYYDNAPFS WDFGNFDKLP QAQVHSLVED  300
AKWSEYLQIP FVTGSSSPEQ SQAYSGIKPD TVNFQTLGFP QSASNTHSKD FQRLALAFGQ  360
TL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-103	MYB family protein