PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM72217.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

GRF

Protein Properties

Length: 388aa MW: 41597.4 Da PI: 8.0959

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM72217.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.3	5.4e-23	125	168	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rC+RtDGKkWRCsr+v + +k+CErH h++r rsrk++e OWM72217.1 125 DPEPWRCKRTDGKKWRCSRDVAPHQKYCERHSHKNRPRSRKPVE 168 79***************************************986 PP
2	QLQ	47.6	4.9e-17	74	108	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 aFT aQ ++L++Q +++Ky++a+ PvPp+Ll++++ OWM72217.1 74 AFTLAQREELERQTMIFKYMVASIPVPPQLLLPLK 108 8*******************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MKLTETGGGF GFGGYGEGSG GSAFANSSSA AATKSLLPFS SSAAAAAASA LADTSFLSPS 60 SSSPGETMGN PRAAFTLAQR EELERQTMIF KYMVASIPVP PQLLLPLKSN TTLGWTRNSS 120 SSSSDPEPWR CKRTDGKKWR CSRDVAPHQK YCERHSHKNR PRSRKPVEFL SNNAAIKPPM 180 QSRDSTLVGS SVTGQESLSH LLPYHTQKEF SHAVVSATPR SLEWFMKGEV IALPNSDQLQ 240 WQHPPHQHQQ QQQRHRPLSS YGPDQELQAQ GGGGLMNDQC SLLLGMASLE GHNCPKGSAS 300 SSKREPVSSL SLAMFGGRGE VGEEGDDDGR ESVGQMDLGV RLNIVSSTGE CERRVESRPH 360 WMSPGGPLAE ALCLGTTSIG KSSPSDLS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MKLTETGGGF GFGGYGEGSG GSAFANSSSA AATKSLLPFS SSAAAAAASA LADTSFLSPS  60
SSSPGETMGN PRAAFTLAQR EELERQTMIF KYMVASIPVP PQLLLPLKSN TTLGWTRNSS  120
SSSSDPEPWR CKRTDGKKWR CSRDVAPHQK YCERHSHKNR PRSRKPVEFL SNNAAIKPPM  180
QSRDSTLVGS SVTGQESLSH LLPYHTQKEF SHAVVSATPR SLEWFMKGEV IALPNSDQLQ  240
WQHPPHQHQQ QQQRHRPLSS YGPDQELQAQ GGGGLMNDQC SLLLGMASLE GHNCPKGSAS  300
SSKREPVSSL SLAMFGGRGE VGEEGDDDGR ESVGQMDLGV RLNIVSSTGE CERRVESRPH  360
WMSPGGPLAE ALCLGTTSIG KSSPSDLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	6e-31	GRF family protein