PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM71671.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 430aa MW: 48891.8 Da PI: 10.0168

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM71671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +++q+G +W++ ++ g+ R++k+c++rw++yl OWM71671.1 14 KGPWTPEEDFILTSYIQQHGHSNWRALPKLAGLLRCGKSCRLRWLNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.2	6.7e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++++++++ +lG++ W++Ia++++ gRt++++k++w+++l OWM71671.1 67 RGNFTEDEEDIIIKLHGLLGNR-WSAIAAKLP-GRTDNEIKNFWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MGRTPCCEEM GLKKGPWTPE EDFILTSYIQ QHGHSNWRAL PKLAGLLRCG KSCRLRWLNY 60 LRPDVKRGNF TEDEEDIIIK LHGLLGNRWS AIAAKLPGRT DNEIKNFWHT HLKKRTEQHS 120 LATAQRKNIC QNSRGSNHEI NSVKVPFTLS RNNLFDEQLL QRSVPRQSQS LLPNQRQPHD 180 STSGETMNQS RPNGVNNDDM DFWTVPRRSV VTCFAASAAG SSNSGGDLNP YEVLGVSPIE 240 GFDVIKAAYT KKRKDAERRG DEATASRLEK AYDKVMMAQL SNRKKGVTFG SFKVSKDIKF 300 ADKQPIVPWG PRFSKSSDQD TRINMAISAV FVSLNNFQSW KLAQTAWVLI KQNAEYKPLQ 360 FLSFVFVYRI FEKLKAFEPP VSPTFTAYTG LLNLIEFVGG YIPAFLYNNQ EPLVTVTSAL 420 FLYIMASYYR

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MGRTPCCEEM GLKKGPWTPE EDFILTSYIQ QHGHSNWRAL PKLAGLLRCG KSCRLRWLNY  60
LRPDVKRGNF TEDEEDIIIK LHGLLGNRWS AIAAKLPGRT DNEIKNFWHT HLKKRTEQHS  120
LATAQRKNIC QNSRGSNHEI NSVKVPFTLS RNNLFDEQLL QRSVPRQSQS LLPNQRQPHD  180
STSGETMNQS RPNGVNNDDM DFWTVPRRSV VTCFAASAAG SSNSGGDLNP YEVLGVSPIE  240
GFDVIKAAYT KKRKDAERRG DEATASRLEK AYDKVMMAQL SNRKKGVTFG SFKVSKDIKF  300
ADKQPIVPWG PRFSKSSDQD TRINMAISAV FVSLNNFQSW KLAQTAWVLI KQNAEYKPLQ  360
FLSFVFVYRI FEKLKAFEPP VSPTFTAYTG LLNLIEFVGG YIPAFLYNNQ EPLVTVTSAL  420
FLYIMASYYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-72	MYB family protein