PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM71528.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 515aa MW: 58595.1 Da PI: 6.7678

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM71528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.2e-17	293	339	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd ll+++v+++G + W+ Ia+++ gR +kqc++rw+++l OWM71528.1 293 KGQWNPEEDRLLIELVERYGEKKWSQIAQKLK-GRVGKQCRERWHNHL 339 799**************************9.***********97 PP
2	Myb_DNA-binding	51.5	2.4e-16	346	387	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eEd +l+da+++lG++ W+ I ++++ gRt++ +k++w+ OWM71528.1 346 DMWSEEEDMILIDAHRELGNK-WAEITKRLP-GRTENTIKNHWN 387 67*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MGNSNSNGFP ALGNTPSHNN NPFVHPFSSF DPHRHEDAHG HGQDHGHHAG DAHQHPVNPF 60 PSHCDPVDEA NGWDHGHHAG DPRHHPINPF PSHQVEETNG HNRGHRASDT HHHPINPFLS 120 DYHRVEEANG HGHHASDSHR HHVNLFPSGY HQVEDANGEG HGHLADDMTH QHHVNPFSTR 180 HHHAKPNDPH QHHGVFPTDL NFNPPYVTPE SDAAADDYHD HKHHHDVHHH HSDEPMIPLD 240 HIFTFRDLNM KPDDDAASDL SLADVNEKEE EADQPIEEAV EGSTQAPKSC MVKGQWNPEE 300 DRLLIELVER YGEKKWSQIA QKLKGRVGKQ CRERWHNHLR PDIRKDMWSE EEDMILIDAH 360 RELGNKWAEI TKRLPGRTEN TIKNHWNATK RRQATRRPKL PGSSIRGGST LLEDYIRSLF 420 PPSLFKDNDN VVKKKANYKR NGKSANDGKE RAAGKKARNL DLEQPPAAYG NGEWQCGCGI 480 GYLLYNQDGD SMARMVAVRK EMDLMEMMRS RHALA

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MGNSNSNGFP ALGNTPSHNN NPFVHPFSSF DPHRHEDAHG HGQDHGHHAG DAHQHPVNPF  60
PSHCDPVDEA NGWDHGHHAG DPRHHPINPF PSHQVEETNG HNRGHRASDT HHHPINPFLS  120
DYHRVEEANG HGHHASDSHR HHVNLFPSGY HQVEDANGEG HGHLADDMTH QHHVNPFSTR  180
HHHAKPNDPH QHHGVFPTDL NFNPPYVTPE SDAAADDYHD HKHHHDVHHH HSDEPMIPLD  240
HIFTFRDLNM KPDDDAASDL SLADVNEKEE EADQPIEEAV EGSTQAPKSC MVKGQWNPEE  300
DRLLIELVER YGEKKWSQIA QKLKGRVGKQ CRERWHNHLR PDIRKDMWSE EEDMILIDAH  360
RELGNKWAEI TKRLPGRTEN TIKNHWNATK RRQATRRPKL PGSSIRGGST LLEDYIRSLF  420
PPSLFKDNDN VVKKKANYKR NGKSANDGKE RAAGKKARNL DLEQPPAAYG NGEWQCGCGI  480
GYLLYNQDGD SMARMVAVRK EMDLMEMMRS RHALA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	4e-60	MYB family protein