PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM71476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | C3H | ||||||||
Protein Properties | Length: 384aa MW: 43097.9 Da PI: 8.3953 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.5e-06 | 83 | 106 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C+ff+rt C yG++C +H+ OWM71476.1 83 KKDCPFFLRTRMCMYGSSCELNHS 106 578****************98887 PP | |||||||
2 | zf-CCCH | 21 | 6e-07 | 125 | 148 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C++++ + Ck+G+ C+++H OWM71476.1 125 KKVECKYYYSSRGCKFGEACRYSH 148 7899******************** PP | |||||||
3 | zf-CCCH | 22 | 2.8e-07 | 293 | 319 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG Cky + C+F+H++ OWM71476.1 293 PGQPECPHHIKTGDCKYKSLCRFHHPK 319 5789*********************96 PP | |||||||
4 | zf-CCCH | 19.7 | 1.5e-06 | 342 | 367 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++lC+ + G+C+ G+ C+F H++ OWM71476.1 342 ERKLCPSYELCGICPSGSACRFDHPK 367 589*********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence |
MRKAMASFEF SPSLSLEEQA IIAAFRSPFL DSEKVQTLIR KLDSEKEQAL MKQLQGITVG 60 ETNGSSSSIR SVQGAELPLR PYKKDCPFFL RTRMCMYGSS CELNHSPPRT NQEGADNEEH 120 LQRTKKVECK YYYSSRGCKF GEACRYSHIW IGQHVKMEQP DLESNLLVPM TQGPKQCPSY 180 MACGFYTYGP NCRLQHPEPV VTGDGSHYGS NSSENLSGLG TKYYQVTGTG DPKVSQYEVS 240 SQQCLHTRLP PRRYDHGSHN APRNQWCKKK GGQHGSLSID RSLIRADIFP ERPGQPECPH 300 HIKTGDCKYK SLCRFHHPKI QALSATSCAM NIGNPIFNFM QERKLCPSYE LCGICPSGSA 360 CRFDHPKEIE LYGTVPNAAA NYGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 4e-43 | C3H family protein |