PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM70839.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 319aa    MW: 34157 Da    PI: 8.3398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM70839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.2e-191358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
       OWM70839.1 13 KGPWSPEEDEALQRLVQTYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding568.9e-1867109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
       OWM70839.1  67 PFTAEEDDTIIRAHAKFGNK-WATIARLLN-GRTDNAVKNHWNST 109
                      89******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MASSSSRDVD RIKGPWSPEE DEALQRLVQT YGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PQVEHRPFTA EEDDTIIRAH AKFGNKWATI ARLLNGRTDN AVKNHWNSTL KRKCASSLGE  120
DSNGGYDGDL PQQPLKRSAS LGAGTVVSDL FPNPSSPSGS DLSDSGLGIS SSNHVFRPVA  180
RNGSIIPHGP APTHPMEVSA PSVVVDPPTS LSLSLPGSEP SEGLARTSSG TGSDPGAEPT  240
RAAPERAGHR YSESADGFEK QFFSAEFMAV MQEMIRKEVR SYMSGVQQQI GAGAGGGLCF  300
QNDSVRNAAV KRIGISRID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-86MYB family protein