PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM70003.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 335aa MW: 36714.9 Da PI: 6.6741

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM70003.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.6e-18	42	87	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l ++v q+G+++W++Iar ++ gR++k+c++rw + OWM70003.1 42 KGSWSQQEDAALTQLVSQFGPRNWSLIARGIP-GRSGKSCRLRWCNQ 87 799***************************.*********985 PP
2	Myb_DNA-binding	56.9	4.6e-18	94	138	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++++ eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ OWM70003.1 94 RKPFSDEEDRIIIEAHAIHGNK-WAAIAKLLP-GRTDNAIKNHWNST 138 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MDEEERRRAY PESPGLDGGG GSSDSPGGGG GGGGEGSGCR VKGSWSQQED AALTQLVSQF 60 GPRNWSLIAR GIPGRSGKSC RLRWCNQLDP AVKRKPFSDE EDRIIIEAHA IHGNKWAAIA 120 KLLPGRTDNA IKNHWNSTLR RRCLNNWRSN SPHNNVIVED TLEENKAVPE VTMSAANSVE 180 DSQEEEREVP VEHRAQVEER HQSIPYRPQA RVGGFKVYNP TNSPTLGRAS ENIRIVPKRG 240 PLVQALRPDL GLDKFLGEVT HHELLVPPKC GGGCCGEPNG EGRHSRSTLL GPEFVDYIEP 300 PDFPGQELVK VAAELNNIAW IHSGLNIENR GWAST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	6e-88	MYB family protein