PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM69476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 201aa MW: 23066.4 Da PI: 8.6215 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.4 | 3.3e-12 | 12 | 42 | 4 | 34 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdae 34 +s r +tf kR++g++KK eE S+LC+++ OWM69476.1 12 TKDSLRRTTFEKRKKGLMKKLEEFSILCGVD 42 56899***********************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MGHGKLVLKF LTKDSLRRTT FEKRKKGLMK KLEEFSILCG VDPERVKQVI DQYFSEGVDR 60 CKKHAKDLRE YFMTSNGAVR AEDETGGMKK RHLAAKESAV MNTSGMVPMQ MDDFKYDNSV 120 HMHMDDYMPL DGIKPPLEFQ QLAIPYLPPL MDPNMMINNS MMWSKVGDSS ANTSNSNSIL 180 ANHHNENNYY YNYSLTHRPG S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 32 | RRTTFEKRKKGLMKKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 2e-10 | M-type_MADS family protein |