PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM69448.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 306aa MW: 34409.7 Da PI: 8.9044

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM69448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++k++G g+W++ ++ g+ R++k+c++rw +yl OWM69448.1 14 KGAWTKEEDDRLINYIKRHGEGSWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	59	1e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ lG++ W++Ia++++ gRt++++k++w+++ OWM69448.1 67 RGNFTEEEDELIINLHSVLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MGRSPCCEKE HTNKGAWTKE EDDRLINYIK RHGEGSWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIN LHSVLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLHSRG 120 IDPLTHGPLN NRASSADGVT KRGRTMSNHN VSDHDKTGNT SGCQAGIKTE GDSWMISLAD 180 DHQFLKKIRS VSAAESNTSS NSGVTTMEEL VFPPRINLEL SIGLPNDQQQ QPRNISFSMH 240 SPPAVDAKDL NASQTKQSNR PEDKSFLPQA VCLCCHLRSR SNNSQMCSCN SVTSDNLFRF 300 YIPFCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-84	MYB family protein