PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM69185.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 724aa MW: 79019.5 Da PI: 7.346

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM69185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	337	357	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+r G Ck Gd C +aHg OWM69185.1 337 PCPEFRR-GACKNGDLCEYAHG 357 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MHTYAQEIRD GIFRSPVEIA RTVTKVLADK AGVLIPSDRA MCGGSERLNL KQTEAPSCQE 60 GGNLNSGMTD SNGTMKRNSS FSCLLEFAAD NDVEGFKRLA CDLSAISEVG VWYSYQKDSK 120 HKVLEQRTPL MIAARYGSTD ILRLITSVPG VDVNHVCDPV KSTALHCAAS GGSANAADVV 180 KLLLLAGADV NAIDANGNRP FDVIVAHPDF PGLKLHLQKL LSNGDAIGQN DLQSSMAVSR 240 SSSPSPCETD LALPEITCNP NDEPLQSARE KKDYLIDPSF PGIKNSMYTT DEFRMYVFKI 300 RPCSRAYSHD WTECPFAHPG ENARRRDPRK FHYSCVPCPE FRRGACKNGD LCEYAHGVFE 360 SWLHPAQYRT RICKDGMSCA RRVCFFAHTN EELRPLYVSS GSGTHSPRSA NSAVPTMDMA 420 SALSLFPGSP SAISAMSAPP FSPPMSPTGN SMLQSSMTLS QQSMPMLNLP TSRLRSSLNA 480 RDIPVEELNL LNSPIPSPPV RSKIVTPSNL DELFSSEVSS PRCYDHRSSS SVLSPSHKSV 540 LLNQFQLQQQ HGMLSPIRTG VFSPKNADHP LIQASLHACS PRGMSPCGID PLSPMSCRLS 600 TFAHCEKLHQ ELQSLKSREF GLSGTIGSPI NSRPKWDSAV SATVDWSVQP DDLIPLPKSS 660 SKGNKRELPD FSWVQSLVKE SPSPFKTRSE IAKPNSNPNP LIDSSDQAIL GAWLEQLELD 720 KIAS

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MHTYAQEIRD GIFRSPVEIA RTVTKVLADK AGVLIPSDRA MCGGSERLNL KQTEAPSCQE  60
GGNLNSGMTD SNGTMKRNSS FSCLLEFAAD NDVEGFKRLA CDLSAISEVG VWYSYQKDSK  120
HKVLEQRTPL MIAARYGSTD ILRLITSVPG VDVNHVCDPV KSTALHCAAS GGSANAADVV  180
KLLLLAGADV NAIDANGNRP FDVIVAHPDF PGLKLHLQKL LSNGDAIGQN DLQSSMAVSR  240
SSSPSPCETD LALPEITCNP NDEPLQSARE KKDYLIDPSF PGIKNSMYTT DEFRMYVFKI  300
RPCSRAYSHD WTECPFAHPG ENARRRDPRK FHYSCVPCPE FRRGACKNGD LCEYAHGVFE  360
SWLHPAQYRT RICKDGMSCA RRVCFFAHTN EELRPLYVSS GSGTHSPRSA NSAVPTMDMA  420
SALSLFPGSP SAISAMSAPP FSPPMSPTGN SMLQSSMTLS QQSMPMLNLP TSRLRSSLNA  480
RDIPVEELNL LNSPIPSPPV RSKIVTPSNL DELFSSEVSS PRCYDHRSSS SVLSPSHKSV  540
LLNQFQLQQQ HGMLSPIRTG VFSPKNADHP LIQASLHACS PRGMSPCGID PLSPMSCRLS  600
TFAHCEKLHQ ELQSLKSREF GLSGTIGSPI NSRPKWDSAV SATVDWSVQP DDLIPLPKSS  660
SKGNKRELPD FSWVQSLVKE SPSPFKTRSE IAKPNSNPNP LIDSSDQAIL GAWLEQLELD  720
KIAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein