PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM68751.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 402aa MW: 43995.6 Da PI: 9.1411

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM68751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	161	184	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C + F+ +++L++H+++ H OWM68751.1 161 FPCTACAEIFPKPHLLEQHQSMkH 184 89******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MVRTVRVGSF FNKFFSLFLL LLLGCFSSSS AASADGHREP PRPNKKKRKL LAAASSSASA 60 VAAISSRFKA TKALSSSWAS IKRAFTRMPS RIAAAAQTQP SPGPTTPTLT SARSSHRSLV 120 SMVQPETLNL LEPHSLVLPS QESNVSSDDN PLFLPLRNDI FPCTACAEIF PKPHLLEQHQ 180 SMKHAVSELT GEDSGQNIVK IIFKMGWTNK DRSPKIDRIL KIHNSPKILT RFEEYRELVK 240 SKAARNGAAG RRRDERCIAD GNELLRFHCS TFMCELGQDG NSATCNQQYC SVCGIIRSGF 300 SPKLDGISTL STSWRAHMAI PDETLEEFRF MNVKRAMLIC RVIAGRVGCD PVDEDGAEKG 360 GCGFDSVVGR GGSGALTLLD EEELLVFNPR AVLPCFVIVF TV

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MVRTVRVGSF FNKFFSLFLL LLLGCFSSSS AASADGHREP PRPNKKKRKL LAAASSSASA  60
VAAISSRFKA TKALSSSWAS IKRAFTRMPS RIAAAAQTQP SPGPTTPTLT SARSSHRSLV  120
SMVQPETLNL LEPHSLVLPS QESNVSSDDN PLFLPLRNDI FPCTACAEIF PKPHLLEQHQ  180
SMKHAVSELT GEDSGQNIVK IIFKMGWTNK DRSPKIDRIL KIHNSPKILT RFEEYRELVK  240
SKAARNGAAG RRRDERCIAD GNELLRFHCS TFMCELGQDG NSATCNQQYC SVCGIIRSGF  300
SPKLDGISTL STSWRAHMAI PDETLEEFRF MNVKRAMLIC RVIAGRVGCD PVDEDGAEKG  360
GCGFDSVVGR GGSGALTLLD EEELLVFNPR AVLPCFVIVF TV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	49	PRPNKKKRK
2	43	49	PNKKKRK
3	45	50	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-111	C2H2 family protein