PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68000.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 295aa    MW: 33474.3 Da    PI: 6.5134
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.2e-181865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
       OWM68000.1 18 RGPWTREEDNLLLHYIARHGEGRWNLLAKCAGLKRTGKSCRLRWLNYL 65
                     89********************************************97 PP
2Myb_DNA-binding49.87.9e-1671114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       OWM68000.1  71 RGNLSPQEQLLILELHYKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 114
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MRGSVSPPNR EEESDLRRGP WTREEDNLLL HYIARHGEGR WNLLAKCAGL KRTGKSCRLR  60
WLNYLKPDVK RGNLSPQEQL LILELHYKWG NRWSKIAQHL PGRTDNEIKN YWRTRVQKQA  120
RQLNVESSSK RFLDVVRLFW MPALLQKTNS HDSTTSSIPS SITSPSTSSI SPPSQDLINQ  180
EQLPNGYNSY EISSSSQSQL ILSPDLGKPS EQREIAEAPI RADDNVEGLI SSYDQSFDGN  240
YFNNMGSPSY NIDGMDAMPA LGVHDCTPSF LCHVDENDIV GHVVEDSFWT TGGLW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.18e-78MYB family protein