PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM67504.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26141.2 Da    PI: 9.2604
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM67504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.9e-32959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  OWM67504.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                79***********************************************95 PP
2K-box89.46.6e-30771684100
       K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 ++++s+ e +a+++qqe+akL+++i++L     hl+G++L+ Ls+keL+qLe++Le+++++iRskK+e+ll +ie+lqkke e+++e  +Lr+k++e
  OWM67504.1  77 ANTTSVIEINAQYYQQESAKLRQQIQML-----HLMGDSLSALSVKELKQLENRLERGITRIRSKKHEMLLCEIEYLQKKEIEMENESVYLRTKIAE 168
                 5566688999***************998.....89***********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
NIKTTIERYK KASSDSANTT SVIEINAQYY QQESAKLRQQ IQMLHLMGDS LSALSVKELK  120
QLENRLERGI TRIRSKKHEM LLCEIEYLQK KEIEMENESV YLRTKIAEIE RMEQANMVPG  180
QEMNAIQVLA SRNFFPPNML EGGNSYSHPD KKLHLGYESI ILCILV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-113MIKC_MADS family protein