PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM66584.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB_related

Protein Properties

Length: 660aa MW: 72470.8 Da PI: 7.5424

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM66584.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.7e-09	546	594	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lvd+v ++G g+W+ I r Rt ++k++w+++l OWM66584.1 546 AWTLSEVMKLVDGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 594 7**************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MKIRGKHPIF IPKEFLFVPL KLLCSSSPSP RNSLFNSAQL SSTGTSLSVD SSSAAVTEST 60 RQRPKSHLVG VEGSDDGQFE DSEIEKFIYD TSPPKQAEDP VVYKLVRVEG DGSLVPATDD 120 EIMEVADLLK DESIDMDIVN DNDKNMCITI EESSNATTLL ESSGFLQCEK DETDAGNIDA 180 MVQDSAVPLL DNSDARDIIR YSDAGECSNP PDPMGSELSP AAVSGSSKPD FSKLKGEICL 240 DNLSIRELHE TFRATFGRET TVKDKAWLKR RILMGLTNSC DVSATNFTIK DNKVPTTGNE 300 GNSKKECSLA KFSGPVRAMD ESNKSSAVEN INYEEDSQVV SAKRLRSHVL VDSYKPDGSN 360 QEEATAKRMR KPTRRYIEEL SDVESRERTS RLTSSYRGSG QGSPQSYATK SVRSDSRTFV 420 TRLDSFAGFQ VPCVSRLRRS RPRKDVMSLM KFHHSSMGAA AKIVKKALHS YQSANEGGNN 480 YARVNSIPKQ LVEESEIYGH TAVTNNTEGD QNTTQRDSGS SEDVSNDNVV TVPTAKGGMR 540 RKHHRAWTLS EVMKLVDGVS RYGAGRWSEI KRLAFASYSY RTSVDLKDKW RNLLKAANFA 600 SAPTDLMNSR KHAVTPIPAP ILSRVRELAE RNGQASPSNV SSSKFGLSGR TPTGSAPGYL

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MKIRGKHPIF IPKEFLFVPL KLLCSSSPSP RNSLFNSAQL SSTGTSLSVD SSSAAVTEST  60
RQRPKSHLVG VEGSDDGQFE DSEIEKFIYD TSPPKQAEDP VVYKLVRVEG DGSLVPATDD  120
EIMEVADLLK DESIDMDIVN DNDKNMCITI EESSNATTLL ESSGFLQCEK DETDAGNIDA  180
MVQDSAVPLL DNSDARDIIR YSDAGECSNP PDPMGSELSP AAVSGSSKPD FSKLKGEICL  240
DNLSIRELHE TFRATFGRET TVKDKAWLKR RILMGLTNSC DVSATNFTIK DNKVPTTGNE  300
GNSKKECSLA KFSGPVRAMD ESNKSSAVEN INYEEDSQVV SAKRLRSHVL VDSYKPDGSN  360
QEEATAKRMR KPTRRYIEEL SDVESRERTS RLTSSYRGSG QGSPQSYATK SVRSDSRTFV  420
TRLDSFAGFQ VPCVSRLRRS RPRKDVMSLM KFHHSSMGAA AKIVKKALHS YQSANEGGNN  480
YARVNSIPKQ LVEESEIYGH TAVTNNTEGD QNTTQRDSGS SEDVSNDNVV TVPTAKGGMR  540
RKHHRAWTLS EVMKLVDGVS RYGAGRWSEI KRLAFASYSY RTSVDLKDKW RNLLKAANFA  600
SAPTDLMNSR KHAVTPIPAP ILSRVRELAE RNGQASPSNV SSSKFGLSGR TPTGSAPGYL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	438	444	RRSRPRK
2	438	445	RRSRPRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	4e-97	MYB_related family protein