PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM66576.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 542aa    MW: 59714.9 Da    PI: 6.5105
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM66576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.82.1e-761605372374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL  cA a+++g+ +++q+lL  l+elasp+gdp++Rla++ ++AL  +l++s+s ++ +++p + ++++     ++l  f++ sP++ +   +aN+
  OWM66576.1 160 EQLLNPCASAITAGNGSRIQHLLYVLHELASPSGDPNHRLASHGLRALTYHLSSSMSITSTSVSPVTFASSEPRFFRKSLLNFNDHSPWFALPSNIANS 258
                 689*****************************************************************98887777777777***************** PP

        GRAS 101 aIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrle 187
                  Il+ + +     + +Hi+D+++s+G+QWp+Ll+ L+  p ++pp +R+T +++++++              +   L +fA+++++++++n l  + ++
  OWM66576.1 259 SILQVLGEVpdksSNLHIVDLGVSHGAQWPTLLDGLSRSPgGPPPLVRLTIISASTESdtgtpfsLGPPGYDYSLLLLDFAKKININLQINRLDNHPIQ 357
                 ***9986555445999*********************99956667********9887778877765667789999*****************9999*** PP

        GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpreseeri 283
                 +l+ +++++ pgE+l+V+ +++lh+l    +++++er+++Lk++++l+Pk v+++e++a++   n ++F++ f++++ey + ++ds +a++    + r 
  OWM66576.1 358 KLDSNAISTIPGETLIVCAQFRLHHLD---HNIPDERSSFLKAIRNLEPKGVILSENNAECscaNCADFATSFSRKVEYLWRFLDSASATY----KSRE 449
                 **************************6...88888999******************98554338899********************8885....7777 PP

        GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + Er++++ e+ +++  + ++    +e + kW er++eaGF++ ++++++ + a++llrk++ ++++rvee++g + l Wk++p+ ++S W+
  OWM66576.1 450 SNERRMMEGEAAKALFSKAEM----NEGKDKWCERMREAGFSEEAFRDDVIDGARALLRKHDsNWEMRVEEKDGYVSLWWKGQPVSFCSLWK 537
                 777777777888888777666....99***********************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MTLGEAEPNP MTDHILDWLE GSVSFFPTFL DDPYNSDDYQ WWEPNQEINQ DVLYTCSNNT  60
ASNTIPTATA STTTTASTVC LNPTSPGQRL KRKSPEEPMP RPSLGQNLSK SQSQQINEAD  120
AAGQGKAMPA KKLSTGKKGS GKPAGRDCNN ANGKDGRWAE QLLNPCASAI TAGNGSRIQH  180
LLYVLHELAS PSGDPNHRLA SHGLRALTYH LSSSMSITST SVSPVTFASS EPRFFRKSLL  240
NFNDHSPWFA LPSNIANSSI LQVLGEVPDK SSNLHIVDLG VSHGAQWPTL LDGLSRSPGG  300
PPPLVRLTII SASTESDTGT PFSLGPPGYD YSLLLLDFAK KININLQINR LDNHPIQKLD  360
SNAISTIPGE TLIVCAQFRL HHLDHNIPDE RSSFLKAIRN LEPKGVILSE NNAECSCANC  420
ADFATSFSRK VEYLWRFLDS ASATYKSRES NERRMMEGEA AKALFSKAEM NEGKDKWCER  480
MREAGFSEEA FRDDVIDGAR ALLRKHDSNW EMRVEEKDGY VSLWWKGQPV SFCSLWKLGA  540
KV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-146GRAS family protein