PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65853.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

AP2

Protein Properties

Length: 331aa MW: 37293.3 Da PI: 6.7979

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	26.8	1.3e-08	61	115	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ +++gr++A+++d ++n ++k+ + g ++ ++ Aa a++ a++k++g OWM65853.1 61 SIYRGVT--RWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEDVAAHAYDLAALKYWG 115 579*7..48******99998898888888*99**********987 PP
2	AP2	38.7	2.4e-12	143	185	10	55
AP2 10 kkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g OWM65853.1 143 HHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 185 569****99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MVKLLQPQNP RNRRTTNNNS SNGNSQGNNN AAITTVNNGD IVKGKRKRRS VPRDSPPQRS 60 SIYRGVTRWT GRYEAHLWDK NCWNESQNKK GRQGAYDDED VAAHAYDLAA LKYWGIDTIL 120 NFPLLTYQKE LKEMEGQSRE EHHHNGRWEA RIGRVFGNKY LYLGTYATQE EAAIAYDMAA 180 IEYRGLNAVT NFDLSRYIKW LKPDNSASQS QPDPNVDQNL TTAVPNHDGL SHMPVQSKHG 240 DFDDVPLHRS RPASATSALG LLLQSSKFRE MMEMTSAADG AAPSRESSAV VSKCSFPEEI 300 QTYFECQESN SLEEGDDIIF GQLNAFTPPL F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	4e-88	AP2 family protein