PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM65814.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family RAV
Protein Properties Length: 340aa    MW: 38343.1 Da    PI: 9.1384
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM65814.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.3e-103883354
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                +kGV     +g W A+I+       + +r++lg+f ++eeAa a++ a+ +l+
  OWM65814.1 38 FKGVV-PQHNGHWGAQIYA------NhQRIWLGTFKSEEEAAMAYDSAAINLR 83
                78886.445899****999......44***********************998 PP
2B378.57.3e-25162258184
                 EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+k+ltpsdv+k++rlv+pkk+a ++             +g +  +++l+++d+  r W+++++y+ +s+++v+t+GW++Fvk++ L+++D+v F l
  OWM65814.1 162 FQKELTPSDVGKLNRLVIPKKYAVKYfprihekrednskEGGPIDDVQLVFYDRLMRMWKFRYCYWSSSQSFVFTRGWSRFVKEKVLRANDTVSFCL 258
                 99***************************9999987766444458899***********************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MISDGRASGE NEASDSNSST VLQIPSKRPR NGLSSGRFKG VVPQHNGHWG AQIYANHQRI  60
WLGTFKSEEE AAMAYDSAAI NLRSGDSHRN FPWTPDSVEE PNFQSLFSQE AVLSMIKDGS  120
YRSKFANYLR IRSERNEAGV GTGPNPVGFQ GERGGFLCRQ LFQKELTPSD VGKLNRLVIP  180
KKYAVKYFPR IHEKREDNSK EGGPIDDVQL VFYDRLMRMW KFRYCYWSSS QSFVFTRGWS  240
RFVKEKVLRA NDTVSFCLCE CTDPTKENRT FYMINVCRNV QAEPLIGAMD RRAAIENRVG  300
SGVGGIAVGG GWEVIKEEPG IHGSPTEDNR GFRLFGVQIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.16e-99RAV family protein