PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM65700.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 320aa    MW: 36331 Da    PI: 6.1729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM65700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++++G+g +W + ++++g++R++k+c++rw++yl
       OWM65700.1 14 KGPWSPEEDAKLKDYIEKHGTGsNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding35.13.2e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eE+ ++  +    G++ W+ Ia  ++ gRt++++k++w++
       OWM65700.1  69 GGFSEEEENIICSLYLSIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGRAPCCDKT SVKKGPWSPE EDAKLKDYIE KHGTGSNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEENIIC SLYLSIGSRW SIIAGQLPGR TDNDIKNYWN TKLKRKLLDK  120
HQLKDQNGSQ QPTVSKRALI KGNLETIEVT DAPEVMMNSY HDHQRLYDPK MIPLVSPEDY  180
QCPINYGFSY TLQDRICRNS SMDVVGIPPA IDSSTSEDCS RISGIDGGMD KEALESFLGH  240
RNTYFPHQPT SEVTVYGDPG LKYDEFTSLY WPIDLDNNIV VDVSSRTCNP PTLSYQEVGL  300
QDESVQSILL EDPRRYFGLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-79MYB family protein