PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM65495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 203aa MW: 21782.7 Da PI: 4.8218 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 175 | 7.9e-55 | 1 | 102 | 4 | 102 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivprd OWM65495.1 1 MFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRD 99 5898887789***************************************************************************************** PP NF-YC 100 elk 102 e+k OWM65495.1 100 EIK 102 975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence |
MFWSYQRQEI EQVNDFKNHQ LPLARIKKIM KADEDVRMIS AEAPILFSKA CELFILELTI 60 RSWLHAEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRDE IKDEAAAAAA LGVAGVPPAM 120 VGGGMGPTAS GVPYYYPPMG QPAAGPGGMM IGRPAMDPSA VYVQPPSQAW QSVWQTAAAT 180 GDDGTYGAGG VGTNGQGSRD GQG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 71 | 77 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48590.1 | 6e-80 | NF-YC family protein |