PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65310.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 403aa MW: 43413.3 Da PI: 9.25

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.1	1.5e-38	90	195	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++k+++ +++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++ti+WLlqqa+pa++++tgt++++a+++ + s ++s+s+ s++ OWM65310.1 90 TPKRTSMKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHRSDGETIQWLLQQAEPAVIAATGTGTIPANFTsLNISLRNSGSSMSAPsqlitkpynft 188 799******************************************************************999766666666664444444444444444 PP TCP 89 ......k 89 + OWM65310.1 189 ssysnpN 195 4443330 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MERRDHEHHS GQSLHHHTHH IVCPDFPFRL LADKEEQEQE LEDHRQSSSS SSIICSNYNI 60 PAAVLPGTSN CAGGPRTAAS TKSLLAKKPT PKRTSMKDRH TKVEGRGRRI RMPALCAARV 120 FQLTRELGHR SDGETIQWLL QQAEPAVIAA TGTGTIPANF TSLNISLRNS GSSMSAPSQL 180 ITKPYNFTSS YSNPNSALSD LILPRRRNNN ISSLCPGSSS TLLNFQSPGG IRSTFRTKQE 240 LKDDDQNHLE VSSKGSMISK NSVRAINNEQ DLLLTSRLLS SPHDQLMNGV IGGGRDEAIW 300 SFQTSSNGSN GSGSVNLSRG MTTTVLSRSN FINFPTTAGS QLLGAPSQQT ASAGFSFGVP 360 DEGAVGMFSG LTRAYQPVSG NTGVVLQPLS IGDYRHEATG GNE

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MERRDHEHHS GQSLHHHTHH IVCPDFPFRL LADKEEQEQE LEDHRQSSSS SSIICSNYNI  60
PAAVLPGTSN CAGGPRTAAS TKSLLAKKPT PKRTSMKDRH TKVEGRGRRI RMPALCAARV  120
FQLTRELGHR SDGETIQWLL QQAEPAVIAA TGTGTIPANF TSLNISLRNS GSSMSAPSQL  180
ITKPYNFTSS YSNPNSALSD LILPRRRNNN ISSLCPGSSS TLLNFQSPGG IRSTFRTKQE  240
LKDDDQNHLE VSSKGSMISK NSVRAINNEQ DLLLTSRLLS SPHDQLMNGV IGGGRDEAIW  300
SFQTSSNGSN GSGSVNLSRG MTTTVLSRSN FINFPTTAGS QLLGAPSQQT ASAGFSFGVP  360
DEGAVGMFSG LTRAYQPVSG NTGVVLQPLS IGDYRHEATG GNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-47	TCP family protein