PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65234.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 873aa MW: 98100.7 Da PI: 5.0425

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00095	306	328	3	23
ETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt..H 23 C Cgk F++k + ++H ++ H OWM65234.1 306 CVACGKKFKSKKQWENHEKSkkH 328 999**************997666 PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MAVPEKRDFY EVLGVHRECT ADEIRSAYKK LALQRHPDKL VQSGISQEDA TAQFQELVHA 60 YEVLSDPKER AWYDSHRSQI LFADAKSSVS GSPIIDLSSY FSNTTFSGYC DTGKGFYKVY 120 SDLFGKVYAA ELNYARKMGV GINSVREAPM MGNLDSPYAQ VTAFYNYWLG FCTVMDFGWV 180 DMYDSAAGES RRLRRLMEEE NKKLRKKARR EYNEMVRGLA EFVKKRDKRV IDMAVKRNME 240 NEKKKEERKK KMEQEKLERA RAAAHKEPEW ATVEEEEEEE EEEELEYEDE VFGDGDNEAK 300 KEELYCVACG KKFKSKKQWE NHEKSKKHKE KVAALRESFI EEDEALDEEI DESVRVEDGE 360 IGNGVESLEE DEVEEIMRRV RDELDIESES GSGEEEKFKE DVGGHGEDHG ADEVSAKEKG 420 KEDVGPSGGD GEKDDGDEIS ILEAMLSGRK NRRKAAASMQ DELKSGGGDS EFMEYDNRKS 480 TRRNRGGKKE RGKKNNGEAV GGNRDEDGRN GFVNSNKEAS VAKTEVRSAD DDEFVEKHKK 540 EKGNAKKDTN MRSKNLPKGK KGKSSAKNSE NLCETCGEEF ESREDIPFGA RSISTQVVRN 600 RMKSVKNIQK ITKAMKMVAA SKLRAIQIRA ENSRGLWQPF TALLGDTPSV DVKKNVIVTV 660 SSDKGLCGGI NSTSVKISKA LYKLNSGPDK ETKYVVLGEK AKAQLVRDSK KNIELTISEL 720 QKNPLNYTQV SVLADDILKN VEFDALRIIF NKFHSVVSFL PTMSTVLSPE IVEREAEAGG 780 KLGELDSYEI EGGETKAEIL QNLAEFQFSC VLFNAVLENA CSEQGARMSA MDSSSRNAGD 840 MLDRLTLTYN RTRQASITTE LIEIISGASA LEG

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MAVPEKRDFY EVLGVHRECT ADEIRSAYKK LALQRHPDKL VQSGISQEDA TAQFQELVHA  60
YEVLSDPKER AWYDSHRSQI LFADAKSSVS GSPIIDLSSY FSNTTFSGYC DTGKGFYKVY  120
SDLFGKVYAA ELNYARKMGV GINSVREAPM MGNLDSPYAQ VTAFYNYWLG FCTVMDFGWV  180
DMYDSAAGES RRLRRLMEEE NKKLRKKARR EYNEMVRGLA EFVKKRDKRV IDMAVKRNME  240
NEKKKEERKK KMEQEKLERA RAAAHKEPEW ATVEEEEEEE EEEELEYEDE VFGDGDNEAK  300
KEELYCVACG KKFKSKKQWE NHEKSKKHKE KVAALRESFI EEDEALDEEI DESVRVEDGE  360
IGNGVESLEE DEVEEIMRRV RDELDIESES GSGEEEKFKE DVGGHGEDHG ADEVSAKEKG  420
KEDVGPSGGD GEKDDGDEIS ILEAMLSGRK NRRKAAASMQ DELKSGGGDS EFMEYDNRKS  480
TRRNRGGKKE RGKKNNGEAV GGNRDEDGRN GFVNSNKEAS VAKTEVRSAD DDEFVEKHKK  540
EKGNAKKDTN MRSKNLPKGK KGKSSAKNSE NLCETCGEEF ESREDIPFGA RSISTQVVRN  600
RMKSVKNIQK ITKAMKMVAA SKLRAIQIRA ENSRGLWQPF TALLGDTPSV DVKKNVIVTV  660
SSDKGLCGGI NSTSVKISKA LYKLNSGPDK ETKYVVLGEK AKAQLVRDSK KNIELTISEL  720
QKNPLNYTQV SVLADDILKN VEFDALRIIF NKFHSVVSFL PTMSTVLSPE IVEREAEAGG  780
KLGELDSYEI EGGETKAEIL QNLAEFQFSC VLFNAVLENA CSEQGARMSA MDSSSRNAGD  840
MLDRLTLTYN RTRQASITTE LIEIISGASA LEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	228	RRLRRLMEEENKKLRKKARREYNEMVRGLAEFVKKRDK
2	202	210	KKLRKKARR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-108	C2H2 family protein