PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM64846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 21284.4 Da PI: 8.6088 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.6 | 1e-15 | 29 | 65 | 8 | 44 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 r vtf+kRr+g++ KA E+S+LC+ +va++ fs+ OWM64846.1 29 IRRVTFTKRRKGLFEKAAEMSILCGSKVAILTFSEGR 65 589*******************************865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence |
MADTSKAPLP RSTRGRQKIE IKKREKVEIR RVTFTKRRKG LFEKAAEMSI LCGSKVAILT 60 FSEGRKAFCF GNPDPDAVLE GYLNGRSLGE IEPSGAYIQA LNESKQLYLE ASMRLERERT 120 KAKCAVQPGP PGFWWGSPMD DLCPEELEYY HNALERMMKT VTAKIEEGSN MEPGPASGLS 180 SLDPQGNNLL V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 39 | KKREKVEIRRVTFTKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-23 | M-type_MADS family protein |