PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM64771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25441.1 Da PI: 8.9493 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.6 | 1.8e-19 | 18 | 62 | 4 | 48 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k qvtfskRr g++KKA+EL++LC++e+ +++fs+ k + OWM64771.1 18 PKKNHLQVTFSKRRSGLFKKASELCTLCGVEITILVFSPASKAFS 62 5667789*******************************9887655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MAKKPSLGRQ KIAIAKIPKK NHLQVTFSKR RSGLFKKASE LCTLCGVEIT ILVFSPASKA 60 FSFGHPEVDS ILDRFLACNN PALDSGVRQL FEVHRSANIR ELNGILTQVM DQLEVEKRRG 120 EELDNARKGK SQYWWESPID EINNPNKLEQ LRSSLEELKQ NVMRQTNKLM MDPVSLMTPF 180 LGPDCNGSNS SGDQFERKPN LDQVNHISAN FLQYFSFPQE NGLF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-48 | M-type_MADS family protein |