PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64770.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 307aa    MW: 34278.8 Da    PI: 9.5279
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.22.6e-242471148
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                kri nksn+qvtfskRr+g++KKA+ELS+LC+a+va+i+fs+  k++ 
  OWM64770.1 24 KRIANKSNQQVTFSKRRTGMFKKASELSILCGAQVAIIVFSPVHKIFC 71
                79***************************************9888765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MVVGSRRNVR TPKPSKGRKK IEIKRIANKS NQQVTFSKRR TGMFKKASEL SILCGAQVAI  60
IVFSPVHKIF CFGHPSVEAV LNRYLHGSNS QQDHQHQVAP AKKKEVLNRY LHGSNSQQDP  120
QHQAAPAEKK DGNNNTLDAA SIQALNLQYA RTMKELEIEK KVVLNRYLHG SNSQQDHQYQ  180
VAPTKEMDGS NIALNAASIQ ALNWQYDRTM KELEIEKKRA VEIESEKGKS KSSGFWWEEP  240
VDVEGMAVEE LEQYILAIEE LIGKAATKAE DLMTRSLLQP YTAGTASDGP ENIGNLGPHG  300
FGPPGFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-29M-type_MADS family protein