PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM64522.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 364aa MW: 40217.4 Da PI: 7.4257

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM64522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.6	3.3e-32	55	194	2	115
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec..eaesssss 81 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ + s +s + a++++ s OWM64522.1 55 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAKHEIDELPPLpmqpvhlgqppmfhqnsS---SSPStsLAVDQNLS 150 689*************************************************************999999988887775422...22221222222222 PP TCP 82 asnsssg...............kaaksaakskksqksaasalnlakesr 115 + + +++ks++ + ++++a+s +n+++ OWM64522.1 151 S-----NrelgsingmnwdgsnNSSKSSQRKFLNNSDANSCRNKSNGDC 194 2.....1233445577777665455555555556666666666665444 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MSSRDPSKEA ANFAPKQEGF SASEDASKTV SKASFAPTPW FRLKDPRVVR VSRAFGGKDR 60 HSKVCTIRGL RDRRVRLSVP TAIQLYDLQD RLGLSQPSKV VDWLLDAAKH EIDELPPLPM 120 QPVHLGQPPM FHQNSSSSPS TSLAVDQNLS SNRELGSING MNWDGSNNSS KSSQRKFLNN 180 SDANSCRNKS NGDCDDEGNR GIISRNDQEE IQQESEGQAA EELVQHSDFS SKTNHNSNYF 240 PYSSNIYHLE PPSIANLPHH GLVTSQSSLE NPQSLMNVQI SSALSLSQTH PYFPVQFIAS 300 SGAGMDPRQV SQFQPTLMMS SGLQNFLPIS HEPPLNSLSH HQSSARAPFN YQLRRKCNSS 360 SVSD

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MSSRDPSKEA ANFAPKQEGF SASEDASKTV SKASFAPTPW FRLKDPRVVR VSRAFGGKDR  60
HSKVCTIRGL RDRRVRLSVP TAIQLYDLQD RLGLSQPSKV VDWLLDAAKH EIDELPPLPM  120
QPVHLGQPPM FHQNSSSSPS TSLAVDQNLS SNRELGSING MNWDGSNNSS KSSQRKFLNN  180
SDANSCRNKS NGDCDDEGNR GIISRNDQEE IQQESEGQAA EELVQHSDFS SKTNHNSNYF  240
PYSSNIYHLE PPSIANLPHH GLVTSQSSLE NPQSLMNVQI SSALSLSQTH PYFPVQFIAS  300
SGAGMDPRQV SQFQPTLMMS SGLQNFLPIS HEPPLNSLSH HQSSARAPFN YQLRRKCNSS  360
SVSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	2e-49	TCP family protein