PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64413.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 344aa    MW: 38400.9 Da    PI: 9.705
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.42.4e-151350542
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                n+  r  tf +R++g++KKAeE S+LC+++ +vii+++
  OWM64413.1 13 NEKLRRLTFERRKKGVIKKAEEFSILCGVDTCVIIYGT 50
                88899*******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MGREKLSLNL VGNEKLRRLT FERRKKGVIK KAEEFSILCG VDTCVIIYGT QVISDQPDVP  60
EIWPPNPEEV ARIIQRYKNE GVNCHKKRAV VGLAEFFQNR KKKLDTDLVK VRTAVWEANI  120
PFSHNLIAKC SEVQLLSLRT LLVRRLESAK KRLKAKEEKE ATSFQARSSI NIVAPGAGFD  180
SDRRHFHHQQ LRHSFYVQAS AGPCCHEPNR INVNLPPFPS QHHAPSAPVP LLPISPPAVD  240
LSHFGPAGLS SVLRQRQTDH HPVSSLDGSA PSSSCSKSNC ATDHVHMPAA MAAHHFLAGN  300
RFHHHPHRSL MNCTDRTHNC SSPAVHHQYS AVLGFPVAMH EPEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186103KKRAVVGLAEFFQNRKKK
2149155AKKRLKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-18M-type_MADS family protein