PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64411.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 350aa    MW: 38644 Da    PI: 7.8747
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.14.5e-16276301126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++tGtC+yGd+C+FaHg
  OWM64411.1 276 FKTELCNKWQETGTCPYGDNCQFAHG 301
                 79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MEKDSSTPSD PSSGATSSSP PSQPPVAPHS PPPLRALCSP LSHQFGADFT TLYRSIFPPK  60
SPRQNSVPAS PSPCSSASSA DDHRNTFNSC NYSSITIENR LQQASLVLEY QQLCERYDLC  120
RAHLHDLVEE IDSIRRENAA LRLANKELVK LLSLSSQAAM HNCLRRLGLL EASSVGSDFG  180
VEEFSGYSPT SVMDQGRFER RNTERVWLPK SISVRSNGYL KANQPANGNN SGSGSSQSAN  240
QLRDSSAHEA GKGQQRVHLP GAKKEEAFEG YSQGMFKTEL CNKWQETGTC PYGDNCQFAH  300
GIAELRPVIR HPRYKTEVCR MILSGDSCPY GHRCHFRHSL TEQETMLAPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-66C3H family protein