PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM62661.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 424aa MW: 47810.8 Da PI: 8.4592

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM62661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H OWM62661.1 57 YVCEICNQGFQRDQNLQMHRRRH 79 9*********************9 PP
2	zf-C2H2	17.1	1.6e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k Hi+t+ OWM62661.1 134 WVCEKCSKGYAVQSDYKAHIKTC 156 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MLVNTSPSPL HPSDPFSNCL DFNGTINKRK RRPAGTPDPD AEVVSLSPKT LLESDQYVCE 60 ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVARKRVFVC PEPSCLHHNP CHALGDLVGI 120 KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHIKTCGTRG HSCDCGRVFS RVESFIEHQD 180 ACSMSRLRAD DSQGLQPACL SQTASSPSPS SDTNLSTTPR PGSRLNCYML NPCNKDESCP 240 SPPDIIILGT PLSRNSNSDP EFQHYHNLEL QLSIGSSSDT RPKRNQGFHA NFPENEKNDN 300 ANKSYNSMKH EMVGLPDVLR LALAEKAYAE DARRESRREV EEAEREFASA RRMRQQAQAE 360 LDRARAMKES ARKQIDSAIL MITCHACKQQ FLQGRDCHHD HRALGMAIDG INSSSAITEG 420 DRCL

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MLVNTSPSPL HPSDPFSNCL DFNGTINKRK RRPAGTPDPD AEVVSLSPKT LLESDQYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVARKRVFVC PEPSCLHHNP CHALGDLVGI  120
KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHIKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACSMSRLRAD DSQGLQPACL SQTASSPSPS SDTNLSTTPR PGSRLNCYML NPCNKDESCP  240
SPPDIIILGT PLSRNSNSDP EFQHYHNLEL QLSIGSSSDT RPKRNQGFHA NFPENEKNDN  300
ANKSYNSMKH EMVGLPDVLR LALAEKAYAE DARRESRREV EEAEREFASA RRMRQQAQAE  360
LDRARAMKES ARKQIDSAIL MITCHACKQQ FLQGRDCHHD HRALGMAIDG INSSSAITEG  420
DRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-108	C2H2 family protein