PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM62626.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 819aa    MW: 92268.2 Da    PI: 6.742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM62626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28.1e-08414457346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rWT +Ed+ l+  +++ G ++W  Ia  +g++Rt+ qc  r+q 
       OWM62626.1 414 RWTIDEDKHLLLIIQEKGINDWVDIAVSLGTNRTPFQCLARYQR 457
                      9*****************************************96 PP
2Myb_DNA-binding51.72.1e-16465511148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r  WT+eEd +l  av+ +G  +W t+a+t+g gRt+ qc +rw k l
       OWM62626.1 465 RREWTPEEDVQLRAAVETYGESDWQTVASTLG-GRTGTQCSNRWKKTL 511
                      678*****************************.***********9975 PP
3Myb_DNA-binding47.34.7e-15519562246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      grW+++Ed +l+ a +++G+++W++I + ++ gRt  qc++rw +
       OWM62626.1 519 GRWSKDEDRRLIVAATLFGPKNWRKICQFVP-GRTHVQCRERWVN 562
                      8******************************.***********87 PP
4Myb_DNA-binding47.63.9e-15571614247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eEd +l  a+ ++G   W++Ia++++  Rt+ qc+ rw  +
       OWM62626.1 571 DKWTAEEDAKLEAAISEHGYC-WSKIAACVP-PRTDSQCRRRWKVL 614
                      69*****************99.*********.9**********865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    
MSYGLLGEDD EELSGSENEE SLFDEDMEAL RRACLLTGTD MPAPSTSDHD ASVDADSDDD  60
LQLVRSIQSR FSISSDLFKP LAVLPPAGSD GEEDDFETLR AIQRRFSAYD HDTLDKGQNG  120
LSIISLVSNV SGSASEEEVS NTVLSGKTDS CRVFPDNKDA CDSADSLNNN KDSGPTGLLD  180
WHPLDVDKPS VESYKCSTFP KSAQVFVDAI RKNRSSQKLL RSKLIQIDAR IEETKKLKER  240
VKILKDFQVS CRKRTGQSLS QKKDPRVQLI STQHKPKKSK GDDKKLSAIY YGPAENCHVA  300
NYRLALMRFP LELHRNKWKE AEKENLFKGI KQQFQEMVFR VSVENFSSSN GDALGFEDLL  360
ASIKDIEISP EEVRKFLPKV NWNQVASMYL PGRSGAECEA RWLNWEDPLI NHARWTIDED  420
KHLLLIIQEK GINDWVDIAV SLGTNRTPFQ CLARYQRSLN PCILRREWTP EEDVQLRAAV  480
ETYGESDWQT VASTLGGRTG TQCSNRWKKT LHPERKRVGR WSKDEDRRLI VAATLFGPKN  540
WRKICQFVPG RTHVQCRERW VNSLDPSLNM DKWTAEEDAK LEAAISEHGY CWSKIAACVP  600
PRTDSQCRRR WKVLFPQEVP LLQQAKKIQR MAFISNFVDR ESERPSLSPN DFLLLPPADP  660
ASTSEPERTD PPSKQERKPR KRAQPSAKGG ARVSNKLRSK KQKTSNEDEA APAGPPDASE  720
ARSCNGDGSD NPSPDISEGK KSSPDQSGNS PNSNNDKRGN PPPDISDCGD HGADERDSPP  780
LDISDAMKSS GYESDCTLAW FIENRLKKLP IRRHGKHWR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1680703RKRAQPSAKGGARVSNKLRSKKQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0MYB family protein