 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OVA20898.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
|
||||||||
| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 325aa MW: 36717.5 Da PI: 4.8201 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 57.9 | 1.7e-18 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k
OVA20898.1 58 KKRRLNVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 111
556899***********************************************9 PP
| |||||||
| 2 | HD-ZIP_I/II | 127.9 | 4.3e-41 | 57 | 149 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ eqvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+d+ Lk++ydalk + ++L++++e+L +e++e
OVA20898.1 57 EKKRRLNVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDFGILKASYDALKLNFDSLQHDKEALLSEVRE 149
69*************************************************************************************999976 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 325 aa Download sequence |
MKRLDSSDSL GGLISICHSA EEKISGGKNI YSRGFQSMLD GLDEDDCAEE SGHFGTEKKR 60 RLNVEQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA IWFQNRRARW KTKQLERDFG 120 ILKASYDALK LNFDSLQHDK EALLSEVREL KSKLQEENTT KSKPSLVKEE ILIMESEIKV 180 AIDHSKTSAS MVGGSSETTD PIQDCYNSSN NGVVGISLFG DLKDGSSDSD SSAILNEDNS 240 PNNAAISSSS GVLQQQQQQN CSINCFQFSD SNREINSVNT QKPNHQHYQF VRMEEHNFFG 300 AEDTCNFFSD DQAPTLHWYY PDQWN |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 58 | 87 | KKRRLNVEQVKALEKNFEVENKLEPERKVK |
| 2 | 106 | 114 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G40060.1 | 5e-55 | HD-ZIP family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|