PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA17111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25519.2 Da PI: 7.3976 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.5 | 1.4e-30 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+ OVA17111.1 2 SCNGCRVLRKGCSEACILRPCLqwidsPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEACGRTVNPVNGAVGLLSTGNWHVCQAAVET 100 6**********************************************************************************************9997 PP DUF260 95 a 95 + OVA17111.1 101 V 101 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MSCNGCRVLR KGCSEACILR PCLQWIDSPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSTGN WHVCQAAVET VFRGGILRPI SVVLGGTLSP 120 ESDEASELEF ECTDHHVEKT RDLCSRSKDS KRKRFEDEVK LELKDLNLSL TPLFPKKVIS 180 NKIGAEIITH HRQQPPIPSM TSAESTDTTY FDCKAAGDHT RTERNLLNLF L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 4e-81 | LBD family protein |