PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA15002.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C2H2

Protein Properties

Length: 576aa MW: 63887.9 Da PI: 7.972

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA15002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OVA15002.1 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP
2	zf-C2H2	11.8	0.00074	172	194	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ OVA15002.1 172 WKCDKCSKKYAVPSDWKAHSKTC 194 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MSNISVDNRS FSSDTNNGEE EEDDFKQQQL QDDLAHGSNS SGGPSTTTTN STNSSSSKQP 60 PPPPPAKKKR NLPGTPDPSA DVIALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLRQRTNN EIRKRVYVCP EPTCIHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKK 180 YAVPSDWKAH SKTCGTRDYK CDCGTIFSRR DSFITHRAFC DALAEGTNKL PHRESLMTEA 240 IDQEANQQVS EFISNNTNNT SINHISTLIN NSSTDHDLIK NPLKSLPNDL MSMPLKPLNM 300 VRSMFSSSPM STTTLFNGCS GTINGITQLT ESAHMSATAL LQKAAQMGAT ASSNNLNNPS 360 VVIQKQSSFM SSSSSSSAMA GIDTGGGFTN QFLQVDPRDQ IPSSHFFNTS ADAESSVIND 420 MGMFNGIFMD DNQQYQNHQF LKNMEQNEHN SSSPSMLLMQ GRTVNSGLGM NRVSNGIRNP 480 IGPSRFRNIN NGGSGDVTTL DFLGIGGSKS LNLYEDKHHH QQQQQQQQQQ RGLEFEGINN 540 NQHRMQAGLH PNFDQQQQQL LHGHGHELME KPIWDV

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MSNISVDNRS FSSDTNNGEE EEDDFKQQQL QDDLAHGSNS SGGPSTTTTN STNSSSSKQP  60
PPPPPAKKKR NLPGTPDPSA DVIALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLRQRTNN EIRKRVYVCP EPTCIHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKK  180
YAVPSDWKAH SKTCGTRDYK CDCGTIFSRR DSFITHRAFC DALAEGTNKL PHRESLMTEA  240
IDQEANQQVS EFISNNTNNT SINHISTLIN NSSTDHDLIK NPLKSLPNDL MSMPLKPLNM  300
VRSMFSSSPM STTTLFNGCS GTINGITQLT ESAHMSATAL LQKAAQMGAT ASSNNLNNPS  360
VVIQKQSSFM SSSSSSSAMA GIDTGGGFTN QFLQVDPRDQ IPSSHFFNTS ADAESSVIND  420
MGMFNGIFMD DNQQYQNHQF LKNMEQNEHN SSSPSMLLMQ GRTVNSGLGM NRVSNGIRNP  480
IGPSRFRNIN NGGSGDVTTL DFLGIGGSKS LNLYEDKHHH QQQQQQQQQQ RGLEFEGINN  540
NQHRMQAGLH PNFDQQQQQL LHGHGHELME KPIWDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	2e-95	C2H2 family protein