PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OVA13873.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28573.7 Da PI: 4.6027 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.9 | 3.1e-14 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien r+v fskRr+gi+K Ae LS LC+ ++ i fs+ g+ OVA13873.1 9 KKIENLQARNVCFSKRRKGIIKQAEKLSKLCNLDIHFITFSPAGE 53 68****************************************998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence |
MGRRELEMKK IENLQARNVC FSKRRKGIIK QAEKLSKLCN LDIHFITFSP AGEPYVSSTS 60 CGNSSSSSAS FDSVIQNYLN DAISDSDLHK TEFQPQIPDV KNDHDLLSLN EVKQSWMDVD 120 VTKLSLSQIQ SYKRYLEKLK SEVAHALEKK TVFEDNNGEG EGSFMVKDEL PLPMISTDDS 180 ISSDQSVYKG AIDEIDDQMH LFSENEHQMI NANTTTDQAY KGDGDKIDHD KMLFRSNDKH 240 FDDIDEVVAS FE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-14 | M-type_MADS family protein |