PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA12615.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 666aa MW: 73773.7 Da PI: 5.2382

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA12615.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.6e-08	71	95	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 lC+ a+tG C+yG++C+F+H+ OVA12615.1 71 LCPEVAKTGrvsSCRYGSNCRFSHD 95 8***********************7 PP
2	zf-CCCH	17.3	8.6e-06	110	129	5	24
--SGGGGTS--TTTTT-SS- CS zf-CCCH 5 lCrffartGtCkyGdrCkFa 24 +C+f + G C+yG C+F+ OVA12615.1 110 NCPFLSLEGPCPYGLACRFS 129 6******************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MDGASMEVEE KVSEDTVISN PVVDVPLLKP EELVAKAIAP VKREFLRPPP IRPCSTDAAT 60 DGGEKKSALH LCPEVAKTGR VSSCRYGSNC RFSHDVEAFK AEKPADIEGN CPFLSLEGPC 120 PYGLACRFSG THKDDVPTET LSIENKRSET NGLNKDVQKL LWKNKMSFPK ADAQLKILGI 180 LEGKPEKVEI KEEEGDQAIL NGSHAACEND AGEVASASVN KTETSEEVPL EEGVVDNAVS 240 TDDPRPIKKA KHPGDENGCS GEMDNGSGPL ENGLEKSCTH IEEETPQKDD FLSEADACLK 300 LHPREKKLID FRGKLYLAPL TTVGNLPFRR VCKVLGADIT CGEMAMCTNL LQGQASEWAL 360 LRRHSSEDLF GVQICGAYPD TIARTVELID RECTVDFIDI NMGCPIDIVV NKGAGSCLLT 420 KPMRMKNIIK AASATVDKPV TVKVRTAYFE GRNRIDSLIS DIGDWGASAV TIHGRSRQQR 480 YSKLADWDYI YQCARKAPDT LQVLGNGDVF SYLDWNQHTS DCPELSACML ARGSLIKPWL 540 FTEIKEHRHW DISSGERLNI FKDFVRFGLE HWGSDTKGVE TTRHFLLEWL SYTYRYIPVG 600 LLDVIPQKLN WRVPSYYGRD DLETLMASDS AADWIRISEL LLGKVPAGFT FAPKHKSNAY 660 DRAENG

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MDGASMEVEE KVSEDTVISN PVVDVPLLKP EELVAKAIAP VKREFLRPPP IRPCSTDAAT  60
DGGEKKSALH LCPEVAKTGR VSSCRYGSNC RFSHDVEAFK AEKPADIEGN CPFLSLEGPC  120
PYGLACRFSG THKDDVPTET LSIENKRSET NGLNKDVQKL LWKNKMSFPK ADAQLKILGI  180
LEGKPEKVEI KEEEGDQAIL NGSHAACEND AGEVASASVN KTETSEEVPL EEGVVDNAVS  240
TDDPRPIKKA KHPGDENGCS GEMDNGSGPL ENGLEKSCTH IEEETPQKDD FLSEADACLK  300
LHPREKKLID FRGKLYLAPL TTVGNLPFRR VCKVLGADIT CGEMAMCTNL LQGQASEWAL  360
LRRHSSEDLF GVQICGAYPD TIARTVELID RECTVDFIDI NMGCPIDIVV NKGAGSCLLT  420
KPMRMKNIIK AASATVDKPV TVKVRTAYFE GRNRIDSLIS DIGDWGASAV TIHGRSRQQR  480
YSKLADWDYI YQCARKAPDT LQVLGNGDVF SYLDWNQHTS DCPELSACML ARGSLIKPWL  540
FTEIKEHRHW DISSGERLNI FKDFVRFGLE HWGSDTKGVE TTRHFLLEWL SYTYRYIPVG  600
LLDVIPQKLN WRVPSYYGRD DLETLMASDS AADWIRISEL LLGKVPAGFT FAPKHKSNAY  660
DRAENG