PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA08605.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | C3H | ||||||||
Protein Properties | Length: 911aa MW: 102257 Da PI: 8.2482 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 184 | 204 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C fa+ G C++G++C+F H OVA08605.1 184 PACTAFAA-GRCRRGSNCRFLH 204 5799****.************* PP | |||||||
2 | zf-CCCH | 21.2 | 5e-07 | 275 | 295 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++G++C++aH+ OVA08605.1 275 RCDDFLK-GNCRRGSSCRYAHD 295 6******.*************5 PP | |||||||
3 | zf-CCCH | 23.1 | 1.3e-07 | 332 | 352 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G+C++Gd+C+F+H OVA08605.1 332 KPCKFFAA-GHCRHGDNCRFSH 352 69**9999.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 911 aa Download sequence |
MTESVRRRNS KWDLKEDPDH FPIEIRQDRA IEIRQDRAWS GRGGEFIHDK ESKSEWHSSR 60 GLSSHDPKWS DIEGKRMPRN EGNSGWLCSL EPSPRNRGVQ NDEINKRVYN EMSKTMTLDG 120 DRSYSMSMSP GLDGWRQQNR SRSPKSGWSR SHRSRSRSRT PPHGYRRELE GSNDRRSGSR 180 VSAPACTAFA AGRCRRGSNC RFLHQDNHDY DGRRYSGSSP ENGGSKHGKG GFLRNANTEE 240 QMDHSRDRIS HGHENVYDGD LEKSDILRNN RSSGRCDDFL KGNCRRGSSC RYAHDGASSD 300 GHGIRERDHD RKDTDAPYGH DNRHEPRRIN SKPCKFFAAG HCRHGDNCRF SHEGTARASP 360 ERRSDDDNRR SHELDHEKRS WGGPKWCDIA PDSAHNGPKE QLVMDKLGNN LGNENRSWVG 420 PKWSDITDNH NLSNENRSWE VPKWSDKVVD SDVKLPSWGN DSDGEKMGVV ESRTTERSFE 480 NMQGQNLDNA SRTWGGPLLN DKPVDRDMHK SPQWISDNNG GSMGFRESMG SGKFLTSESM 540 LSSGAKDQYP RFINEDMEHN QDSKSRNPNE INLPTGKQNI TQAVSGQPHS SINVNGQSQQ 600 VLPTPAFNPK ERVQQIVSPP SSNPYHKKMA HQEEPIKKPD LVDPRLIAQQ VSSGAPMTQN 660 VASSEQVAQL TNISASLAQI LANGQHLPQL YAALNPTASG LVPSHPNSVG PPQVVAPLIQ 720 PNQTTQSQKQ YDPISDSIDQ DKAADDSQSP LKTIAPSSVS ADPNGGDASN IGILEEKVHE 780 SHELKQPEQV VDQNAADDIK KEQHTGHSGQ MDVDGRIDEE GKKNKDPKVM RVFKFALVEF 840 VKELLKPTWK EGQMSKEAHK TIVKKVVDKV TGTIQGAQIP QTQEKIDHYL SYSKPKLTKL 900 VQAYVEKYLK T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-16 | C3H family protein |