PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA08229.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

ARF

Protein Properties

Length: 760aa MW: 84712 Da PI: 7.3666

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA08229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.5	2.5e-23	155	255	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +k+a+e+ + + +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++el OVA08229.1 155 FCKILTASDTSTHGGFSVLRKHANEClpaldmtQ--ATPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGENGEL 249 99**************************9543..445569*********************************************..449999 PP EEEEE- CS B3 93 vvkvfr 98 +v+v+r OVA08229.1 250 RVGVRR 255 ****98 PP
2	Auxin_resp	107.3	1.7e-35	281	360	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+v+++k+++a+++k+svGmRfkm+fe+eds+err++Gt+vgv d++p +W +SkWrsLk OVA08229.1 281 ASHAVATETYFIVYYKPRT--SQFIVSLNKYLEAVNNKFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISP-QWADSKWRSLK 360 689*************6..9*******************************************99.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence
MRLRKRFGDL VTAFPGFLAG DREIWLMACI DNFRGSQQNF SGGRTDTGAD LYTELWKACA 60 GPLVDVPQEG EKVYYFPQGH MEQLEASTNQ ELNQRIPLFN LPSKIRCRVM NTQLLAEQET 120 DEVYAQITLL PEHDSEPISP EPCEPDLLKP TVHSFCKILT ASDTSTHGGF SVLRKHANEC 180 LPALDMTQAT PTQELAAKDL HGYEWKFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV 240 FLRGENGELR VGVRRLARQQ STMPTSVISS QSMHLGVLAT ASHAVATETY FIVYYKPRTS 300 QFIVSLNKYL EAVNNKFSVG MRFKMRFEGE DSPERRFTGT IVGVGDISPQ WADSKWRSLK 360 VQWDETAPIQ RPERVSPWEI EPFVPTAPPS SLIQPSIIKN KRPRPSIDLP VLDITTSSVA 420 SPFWYPGSTQ SHETTTLSGP EVQNNESQVV WPPKQKEVKG NVNSSNSYNS RTRQDGGWPS 480 SPLVNVSLNL FQDTGKDNNT VSTWPALSSY STPDHPSKPN NGLMQDLVEK VKKPETPSGC 540 RLFGIELVNH SNTPISVEKV STNPISVSTA TTEGAPPATL SGADSEQLSS LSKTSKELKQ 600 GLLQSSSNDI QSKSCSTTST RSRTKVHMQG IAVGRAVDLT ILDGYDDLIN ELEKMFEIKG 660 ELRPRNKWEV AFTDDDGDMM RVGDDPWLDF CKMVKKIFIY TSQDVKKISP GDKLPASSSS 720 LEGEGNALRF LELNIKRVGV RDKIGIITVW DVKVVMAMFK

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence

MRLRKRFGDL VTAFPGFLAG DREIWLMACI DNFRGSQQNF SGGRTDTGAD LYTELWKACA  60
GPLVDVPQEG EKVYYFPQGH MEQLEASTNQ ELNQRIPLFN LPSKIRCRVM NTQLLAEQET  120
DEVYAQITLL PEHDSEPISP EPCEPDLLKP TVHSFCKILT ASDTSTHGGF SVLRKHANEC  180
LPALDMTQAT PTQELAAKDL HGYEWKFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV  240
FLRGENGELR VGVRRLARQQ STMPTSVISS QSMHLGVLAT ASHAVATETY FIVYYKPRTS  300
QFIVSLNKYL EAVNNKFSVG MRFKMRFEGE DSPERRFTGT IVGVGDISPQ WADSKWRSLK  360
VQWDETAPIQ RPERVSPWEI EPFVPTAPPS SLIQPSIIKN KRPRPSIDLP VLDITTSSVA  420
SPFWYPGSTQ SHETTTLSGP EVQNNESQVV WPPKQKEVKG NVNSSNSYNS RTRQDGGWPS  480
SPLVNVSLNL FQDTGKDNNT VSTWPALSSY STPDHPSKPN NGLMQDLVEK VKKPETPSGC  540
RLFGIELVNH SNTPISVEKV STNPISVSTA TTEGAPPATL SGADSEQLSS LSKTSKELKQ  600
GLLQSSSNDI QSKSCSTTST RSRTKVHMQG IAVGRAVDLT ILDGYDDLIN ELEKMFEIKG  660
ELRPRNKWEV AFTDDDGDMM RVGDDPWLDF CKMVKKIFIY TSQDVKKISP GDKLPASSSS  720
LEGEGNALRF LELNIKRVGV RDKIGIITVW DVKVVMAMFK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	401	405	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein