PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA04992.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

CO-like

Protein Properties

Length: 480aa MW: 53240.5 Da PI: 5.0502

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA04992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.2	1.7e-08	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C+ ++ +lC+ C + H+ H++v OVA04992.1 17 ARACDSCMCKRARWYCTADDAFLCQACDASVHSAnslarrHERV 60 578*****************************657788888876 PP
2	CCT	68	2.6e-23	419	462	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ OVA04992.1 419 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 462 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MNISDKKAAN AVGGKTARAC DSCMCKRARW YCTADDAFLC QACDASVHSA NSLARRHERV 60 RLKTSSMKPT EKTINSSLEI NSSLLPTWHQ GFRRKARTPR HGKPMLSQQP PKADDEEPIL 120 MNNNNPHLPH LVPEIGSDET SPDENEEQLL YRVPIFDPFV AEFCTSVMAN EVVTTPTNEV 180 SNTIGNHNSK ILLPEYDHVP AEDFENLSCL NLPSDMDLTE FAADVETLLG RGLDEDSFGM 240 EGLGLLDSKE EEYYCFGSNT GRVKEEAEED EELEAVVACH LEQEFDMSRE TLDLNFDYDS 300 PTTGEEEEEK VVNTSVAPMM MMMMMNDGVR NKSADMTTKS SISLRLNYEA VIAAWASQGG 360 SPWTTGDRPP FNPDDCWPEC LGTCHPDVHH HHGYGDMAGG VGGGGGGGGH VGMIGDGGRE 420 ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RTSSSSSSFM GSSATTALPF

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MNISDKKAAN AVGGKTARAC DSCMCKRARW YCTADDAFLC QACDASVHSA NSLARRHERV  60
RLKTSSMKPT EKTINSSLEI NSSLLPTWHQ GFRRKARTPR HGKPMLSQQP PKADDEEPIL  120
MNNNNPHLPH LVPEIGSDET SPDENEEQLL YRVPIFDPFV AEFCTSVMAN EVVTTPTNEV  180
SNTIGNHNSK ILLPEYDHVP AEDFENLSCL NLPSDMDLTE FAADVETLLG RGLDEDSFGM  240
EGLGLLDSKE EEYYCFGSNT GRVKEEAEED EELEAVVACH LEQEFDMSRE TLDLNFDYDS  300
PTTGEEEEEK VVNTSVAPMM MMMMMNDGVR NKSADMTTKS SISLRLNYEA VIAAWASQGG  360
SPWTTGDRPP FNPDDCWPEC LGTCHPDVHH HHGYGDMAGG VGGGGGGGGH VGMIGDGGRE  420
ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RTSSSSSSFM GSSATTALPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	430	446	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-86	CO-like family protein