PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA01176.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

GRF

Protein Properties

Length: 609aa MW: 66168.3 Da PI: 7.6996

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA01176.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	224	268	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e OVA01176.1 224 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 268 79****************************************985 PP
2	QLQ	62.8	9e-22	155	191	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+P+P++Ll +i+k OVA01176.1 155 GPFTPSQWMELEHQALIYKYINANVPIPSNLLIPIRK 191 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MDFGLVGFDG MVGSESGFPS LVSDAETRQK GYGSGFLKQE RSGPAEEDWR SLKMARNDDF 60 STSKTMLFPQ RNPSSLRSNS LFSDGQPQQQ MLSFSSPKSD PFLLNNDGGL MERSLQNSTL 120 PYSYHTSSTT YPRNTGLGSG SLGSSMHGVL AGVRGPFTPS QWMELEHQAL IYKYINANVP 180 IPSNLLIPIR KALNPTGFSG FGGSLRPNTL GWGSFHLGFS SNTDPEPGRC RRTDGKKWRC 240 SRDAVADQKY CERHMNRGRH RSRKPVEGQT GHAGSGPATA KVIPMASSSA SVVASGGASN 300 SLTIAQHQIR NLQQGAADPS VNTQINRNLL NKENMGSRIQ ESQGLSILSP NMNLRPKDTP 360 FSIPKQHNPF EESSRTEFGL VPSDSLLNPS ERSSYIDCRN FGSSSDLNDP EPQDQHPLRH 420 FIDDWPKNRS DRSSITWPEI EEIQSDRTQL SISIPVASSD FSSASSSPTH DKLALSPLRL 480 SREFDPIQMG LGVGSILNEP NHRQANWIPI SWETSMGGPL GEVLNNTNNT TGDGKNSSAL 540 NLMTVGWDSS PRMGSSPTGV LQKTTFGSLS NSSTGSSPRA ETNKTHDRVS LCDDLLGSTL 600 VNSSSIPSI

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MDFGLVGFDG MVGSESGFPS LVSDAETRQK GYGSGFLKQE RSGPAEEDWR SLKMARNDDF  60
STSKTMLFPQ RNPSSLRSNS LFSDGQPQQQ MLSFSSPKSD PFLLNNDGGL MERSLQNSTL  120
PYSYHTSSTT YPRNTGLGSG SLGSSMHGVL AGVRGPFTPS QWMELEHQAL IYKYINANVP  180
IPSNLLIPIR KALNPTGFSG FGGSLRPNTL GWGSFHLGFS SNTDPEPGRC RRTDGKKWRC  240
SRDAVADQKY CERHMNRGRH RSRKPVEGQT GHAGSGPATA KVIPMASSSA SVVASGGASN  300
SLTIAQHQIR NLQQGAADPS VNTQINRNLL NKENMGSRIQ ESQGLSILSP NMNLRPKDTP  360
FSIPKQHNPF EESSRTEFGL VPSDSLLNPS ERSSYIDCRN FGSSSDLNDP EPQDQHPLRH  420
FIDDWPKNRS DRSSITWPEI EEIQSDRTQL SISIPVASSD FSSASSSPTH DKLALSPLRL  480
SREFDPIQMG LGVGSILNEP NHRQANWIPI SWETSMGGPL GEVLNNTNNT TGDGKNSSAL  540
NLMTVGWDSS PRMGSSPTGV LQKTTFGSLS NSSTGSSPRA ETNKTHDRVS LCDDLLGSTL  600
VNSSSIPSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-105	GRF family protein