PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA12G16580.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 268aa MW: 27928.1 Da PI: 10.7887

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G16580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2.1e-14	88	135	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ahn E+rRR +i ++f +L++l+P + + K + a++L ++++Y+ksLq ONIVA12G16580.1 88 AHNLTEKRRRFKITERFRTLQRLVPGC----DNKSNQASTLDQTIQYMKSLQ 135 8***********************9....89****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MAAWLYPIVG GHQVAAGGWL SPEAGDDRRA APPAPEKKQM DNMPAVASPT TTMNKDEASD 60 DSGERKKKKK KASSAAGKAS RHRHAAGAHN LTEKRRRFKI TERFRTLQRL VPGCDNKSNQ 120 ASTLDQTIQY MKSLQHQLEA TSAVGSPAAA VLYPAAVHPQ SYMHPPAPPP PVAGAAAPVT 180 MAPMPAGMVL AAAPPGAAPP PGPPATMMPF GAMLPYPPYP AVLLPPPPAT LYGRPPAAAP 240 SVAARRHGST SGGGRISKSS SSSLRKEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	70	ERKKKKK
2	65	71	RKKKKKK
3	93	98	EKRRRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-12	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G16580.1