PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA12G05970.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 224aa MW: 24781.5 Da PI: 4.7776

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G05970.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.9	4.6e-25	99	189	2	89
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+ +GF r+ +s++s +++ +++++fvCs+eg +++++ + + +++r+ra+ r gC+a+++v ++ +++w+v+kle+ HnH+l ONIVA12G05970.3 99 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQPStsgEATSKRERASMREGCNAMMEVVRD-KDHWVVSKLEKAHNHSL 189 9*****************944567789*******9999888787888999***********999.9************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDALILEGA PDDVDDDAAA AAAAAAEQDV 60 MRDFAPGDGD GDGDADAEND PKEPVLGMTF ESDEAAKMFY NEYARWLGFP FRVGRSRRSK 120 GMEEVVIMKR FVCSREGAHK KKQPSTSGEA TSKRERASMR EGCNAMMEVV RDKDHWVVSK 180 LEKAHNHSLG IGTRYGYLRA RGLPDINVKS QMQTAAKTRN HISH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-21	FAR1 family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G05970.3